Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0684 ATGGGGCTGCGTGTTTTGTCATACCCACAAAGGAATCTGCTGATGAAGTTCTCATCTCTGTCCCCAGTTACTGCAACTGCCAGCATCAAAACTGTCAGAGGGGCTTTGTCTTGCAGGTGTGTTGGTTGTCAATTGAACTTGGATGATTTCAGCTGCAAGAAGAGCCAGTTGGAAAGAGTTTACTCCACCAATTCAAATGGGAAATTTAGCAATAAGCAGTTTATTAGTGTTGATCCACGGATTTATGAGTATGTTCTCTCCAATGTTCGTGAGCCTGAGGTATCTCCTGATCAGGCACAACTTCTTGCAATGCTTGTTCAGATTCTTGGTGCAAAGCGGTGCATTGAAGTGGGTGTTTACACTGTAGGCCCTCTTGTCCAATCTTACTGCTCAACAGGTGGCTCTTCTTCCAAATATATATTGTCATCTGAAGCTGGATATTCATCCTTGGCCGTAGCACTAGTCCTGCCGGAATCAGGGCGTTTAGTTGCCTGTGAAAGAGATATCAAATATCTCGAGGTTGCTAAAAGATATTATGAACTTGCTGGTGTTTCACACAAAGTAAATATTTCTTCATTTGCTGTGGATGTGAGACATGGGCTTGCAGCAGATACACTCAAATCACTTATTGCAAATGGTGAAGCTTGCAGCTATGATTTTGCATTCATTGATGCCGAGAAGAGGATGAACGAGGAATACTTTGAACTCCTATTGCAACTGGTGAGGGTTGGAGGTTTAATTGTGATCGACAATGTCCTTTGGTATGGAAAAGTAGCTGACCCGACGGTAAATGACAAGAAGACTGATAGCATTAGGAGATTGAATAAAAAGATAATGGAAGACGATCGAGTCGGGATAAGTGCCCATTGGAGATGGCATGACAATTTGCCAAAAGAGATGAAGGGTGCCTGTTGA 915 42.95 MGLRVLSYPQRNLLMKFSSLSPVTATASIKTVRGALSCRCVGCQLNLDDFSCKKSQLERVYSTNSNGKFSNKQFISVDPRIYEYVLSNVREPEVSPDQAQLLAMLVQILGAKRCIEVGVYTVGPLVQSYCSTGGSSSKYILSSEAGYSSLAVALVLPESGRLVACERDIKYLEVAKRYYELAGVSHKVNISSFAVDVRHGLAADTLKSLIANGEACSYDFAFIDAEKRMNEEYFELLLQLVRVGGLIVIDNVLWYGKVADPTVNDKKTDSIRRLNKKIMEDDRVGISAHWRWHDNLPKEMKGAC 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6645411 6650401 + Maker00004178 Lcy6g0684 635128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0684 304 Gene3D Vaccinia Virus protein VP39 61 123 IPR029063 -
Lcy6g0684 304 Pfam O-methyltransferase 145 287 IPR002935 GO:0008171(InterPro)
Lcy6g0684 304 Pfam O-methyltransferase 91 121 IPR002935 GO:0008171(InterPro)
Lcy6g0684 304 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 74 302 IPR002935 GO:0008171(InterPro)
Lcy6g0684 304 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 146 284 IPR029063 -
Lcy6g0684 304 PANTHER O-METHYLTRANSFERASE-RELATED 92 287 IPR050362 GO:0008757(PANTHER)
Lcy6g0684 304 Gene3D Vaccinia Virus protein VP39 143 289 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0684 Lcy-Chr6:6645411 Lcy9g1066 Lcy-Chr9:34474792 5.80E-27 dispersed
Lcy6g0682 Lcy-Chr6:6629978 Lcy6g0684 Lcy-Chr6:6645411 6.87E-14 proximal
Lcy6g0683 Lcy-Chr6:6636380 Lcy6g0684 Lcy-Chr6:6645411 4.59E-73 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0684 - - - 0.0