Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0688 ATGGCGGACGAAGTGAAACTGTTGGATCTTTGGGCTAGCATGTTCGGGATGCGAGTCAGAGTAGCCCTGGCCGAGAAGGGCGTCGCCTACGAATGTGTGGATGAAGATCTGAGGAACAAGAGCCCTTTGCTTCTGCAGATGAACCCAATTCACAAGAAGATCCCTGTTCTTGTTCATAATGGAAAACCCATCTGTGAATCTTCCATTATCGTTCAGTATATCGATGAAGTCTGGAAGGATAAAGCTCCTTTGTTGCCGACTGATACTTATCAGAGGGCTCAGGCCAGATTTTGGGTGGATTTCATTGACAAGAAGTTTTATGGTGCTGCAAAGAAGATATGGGGCAGCACGGAGGAGGATGAGCATGAGGCAGGCAAGAAGGAGGTGATAGAAATTTTGAAGCAATTGGAAGAGTTTCTTGGGGAGAAGGCTTACTTTGGAGGTGATTGTTTGGGATTTGTAGACATTGCTTTGATTGGATACTACCCTTGGTTTTATACCTTTGAAACCATTGGGAAGTTCAGCATTGAGGCTGAGTGTCCAAAGACAATGGCTTGGGCCAAGAGATGCTTGCAAAAGGACAGTGTTTCAAAGTCACTGGCTGATCCCAAGAAGGTCTATGACTTTGTGCTTCAATTGAGGAAAGATCTTGGCATTGACTAA 663 45.25 MADEVKLLDLWASMFGMRVRVALAEKGVAYECVDEDLRNKSPLLLQMNPIHKKIPVLVHNGKPICESSIIVQYIDEVWKDKAPLLPTDTYQRAQARFWVDFIDKKFYGAAKKIWGSTEEDEHEAGKKEVIEILKQLEEFLGEKAYFGGDCLGFVDIALIGYYPWFYTFETIGKFSIEAECPKTMAWAKRCLQKDSVSKSLADPKKVYDFVLQLRKDLGID 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6681094 6683993 + Maker00004268 Lcy6g0688 635132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0688 220 Pfam Glutathione S-transferase, C-terminal domain 113 192 IPR004046 -
Lcy6g0688 220 Gene3D Glutaredoxin 1 87 - -
Lcy6g0688 220 SFLD Glutathione Transferase (cytosolic) 2 217 IPR040079 -
Lcy6g0688 220 Gene3D - 88 220 - -
Lcy6g0688 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 210 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lcy6g0688 220 SUPERFAMILY GST C-terminal domain-like 76 215 IPR036282 -
Lcy6g0688 220 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Lcy6g0688 220 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Lcy6g0688 220 FunFam Glutathione S-transferase U20 88 220 - -
Lcy6g0688 220 FunFam Tau class glutathione S-transferase 1 87 - -
Lcy6g0688 220 CDD GST_C_Tau 90 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lcy6g0688 220 CDD GST_N_Tau 5 78 - -
Lcy6g0688 220 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Lcy6g0688 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Lcy6g0688 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0688 Lcy-Chr6:6681094 Lcy6g0691 Lcy-Chr6:6703209 1.54E-136 dispersed
Lcy6g0687 Lcy-Chr6:6678324 Lcy6g0688 Lcy-Chr6:6681094 2.28E-138 tandem
Lcy6g0688 Lcy-Chr6:6681094 Lcy6g0689 Lcy-Chr6:6684603 4.17E-148 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0688 K00799 - csv:101218562 357.836