Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0701 ATGACTTGCTTCCCTTTTTTCTTCAGTAAGAGGGTAAAGCCCCCAACAAGAAGTTTTGACGATAGTGAAGAACTTTCAGGCCTTCACAATGTTAGATTTTACACATACAAAGAGCTAAAAGTTGCAACTGAAGATTTCAGCTTGGCAAATAAAATAGGGGAGGGCGGTTTTGGTTCTGTCTACAAGGGAAAGCTAAGAGATGGAAAGATTGCTGCCATAAAAGTTCTTTCGGCTGAATCAAGACAAGGATTGAGGGAATTCTTGACAGAAATCAATGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGATGATAATCATAGAATTCTTGTCTACAATTACCTCGAGAACAATAGCCTTGCACAAACTCTTCTTGGGCGAGGTTACAGTAGCATCCAGTTTGATTGGCAAACAAGGTCTAAAATTTGTATCGGAATTGCACGTGGGCTTGCCTTCCTTCACGAGGATGTACAGCCACATATCATCCATCGAGATATAAAAGCAAGTAATATTCTTCTTGACCGTGATCTCACTCCTAAAATTTCAGATTTCGGTCTCGCAAAGCTTATTCCAGCCAGCATGACTCACGTCAGTACACGAGTGGCCGGAACAATTGGTTACCTGGCACCGGAATATGCTATAAGAGGGCAGGTGACAAGAAAATCAGATATTTACAGTTTCGGCGTCCTTCTTGTGGAAATAGTCAGCGGGAGGTGCAACACAAATACGCAGTTACCGATTGGAGAACAATATCTTCTCGAAAGGACATGGAATCTTTATGAGCGAGGAGAGCTCGTTCTGCTAGTAGATATGTCCTTAAACGGCGACTTCGATGCCGAGGAGGCTTGTAAATATCTAAAGATTGGTCTACTTTGCACACAAGACAGTCCGAAGCTCCGTCCATCAATGTCGACTGTGGTAAAGATGCTAACGGGCGAGATCAGTATCGAAGATAGAAAGATAACGAAACCAGGGCTGATTTCAGACTTCATGGATCTAAAAGTAAAGAATCCAGTGCAAAAGAAAGGGAACAGAGGGGAGGGAGTGTCTGATGATAGTCTGTCCTCTGGATCAAACACCCATGGACATTCAACAATGTCATATGAAACCTCAACTGTTACAACTCCAACCTTCACTGCACAGTATGACAGGAACACTTTCTCATCTGTACTGTGA 1197 42.69 MTCFPFFFSKRVKPPTRSFDDSEELSGLHNVRFYTYKELKVATEDFSLANKIGEGGFGSVYKGKLRDGKIAAIKVLSAESRQGLREFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFDWQTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDRDLTPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNTNTQLPIGEQYLLERTWNLYERGELVLLVDMSLNGDFDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEISIEDRKITKPGLISDFMDLKVKNPVQKKGNRGEGVSDDSLSSGSNTHGHSTMSYETSTVTTPTFTAQYDRNTFSSVL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6834561 6839125 - Maker00004290 Lcy6g0701 635145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0701 398 MobiDBLite consensus disorder prediction 356 377 - -
Lcy6g0701 398 CDD STKc_IRAK 52 319 - -
Lcy6g0701 398 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524(InterPro)
Lcy6g0701 398 Pfam Protein kinase domain 48 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0701 398 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Lcy6g0701 398 FunFam cold-responsive protein kinase 1 17 121 - -
Lcy6g0701 398 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 350 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lcy6g0701 398 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0701 398 MobiDBLite consensus disorder prediction 347 377 - -
Lcy6g0701 398 FunFam cold-responsive protein kinase 1 122 333 - -
Lcy6g0701 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0701 398 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Lcy6g0701 398 SMART serkin_6 46 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0701 398 SUPERFAMILY Protein kinase-like (PK-like) 20 317 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1380 Lcy-Chr1:13367297 Lcy6g0701 Lcy-Chr6:6834561 1.54E-126 dispersed
Lcy5g0118 Lcy-Chr5:1200869 Lcy6g0701 Lcy-Chr6:6834561 7.88E-103 dispersed
Lcy5g1899 Lcy-Chr5:41808317 Lcy6g0701 Lcy-Chr6:6834561 7.39E-72 dispersed
Lcy6g0663 Lcy-Chr6:6313621 Lcy6g0701 Lcy-Chr6:6834561 2.14E-106 dispersed
Lcy6g0701 Lcy-Chr6:6834561 Lcy9g1380 Lcy-Chr9:38709991 8.45E-105 dispersed
Lcy6g0701 Lcy-Chr6:6834561 Lcy9g1396 Lcy-Chr9:38975458 5.62E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66021 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0701 - - - 0.0