Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0718 ATGCTATTCTCAGCGGCGGCGGCGCCGATTCTGAACGAGAAGTACCATGCGGCGGAGACCGGCCTGATAACGAGTGCGATCTGCGCAGGACTGGCGGTTATGGCCGTAATCCTCTCCATCGGCCACATCTCCGGCGCTCACTTGAATCCCTCCGTCACCGTAGCCTTCGCCGCTCTCCGTCACTTTCCATGGCTTCACGTCCCGTTCTACATCGCCGCTCAGATTTCCGGATCTGTTTGCGCCGCTTTCAGCCTCAAGGCCGTCTTCCGTCCGTTCATGTCCGGCGGTGCCACCGTGCCATCCGTCGGCACCGGCCAGGCGCTTGCGATCGAGTTCATCGTCACATTCTTCCTCATGTTCGTCATTGTTGCGGTCGCCACTGATACTAGAGCGGTACTGTATCGATCGGCTCTCTGA 417 59.47 MLFSAAAAPILNEKYHAAETGLITSAICAGLAVMAVILSIGHISGAHLNPSVTVAFAALRHFPWLHVPFYIAAQISGSVCAAFSLKAVFRPFMSGGATVPSVGTGQALAIEFIVTFFLMFVIVAVATDTRAVLYRSAL 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6980340 6980756 + Maker00004215 Lcy6g0718 635162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0718 138 Gene3D Glycerol uptake facilitator protein. 1 137 IPR023271 -
Lcy6g0718 138 SUPERFAMILY Aquaporin-like 13 132 IPR023271 -
Lcy6g0718 138 ProSitePatterns MIP family signature. 47 55 IPR022357 -
Lcy6g0718 138 PRINTS Major intrinsic protein family signature 110 128 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g0718 138 PRINTS Major intrinsic protein family signature 66 85 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g0718 138 PRINTS Major intrinsic protein family signature 29 53 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g0718 138 Pfam Major intrinsic protein 4 132 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g0718 138 PANTHER AQUAPORIN NIP2-1 2 132 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0246 Lcy-Chr1:2212111 Lcy6g0718 Lcy-Chr6:6980340 7.23E-28 dispersed
Lcy6g0718 Lcy-Chr6:6980340 Lcy12g1446 Lcy-Chr12:32924441 5.25E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0718 K09874 - ath:AT4G10380 197.208