Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0725 ATGCTTCGCAGCTTAATCCCTCAATCCCCAATCAATTCCACTTCCAATTCCCACTCCAATTCCATGAAGTCCAAGCGCTCCGACCGGGACCCCGCCGACGCCGACTCCACCGCCGATGATCCTTCCGCCAAGCGCTTCAATTCTGCCCTCACCAACTTCGACGCCGGCGGCTCCGGCGAGAAGCCCGTTGAGGACGAGGAGGAGGAAGAAGAGGAGCCTCTTGTCGAGGGCAGCGAGTCCACTGGTCTGAGACTGCTTGGGCTTCTCCTTCAATGCGCCGAGTGCGTTGCTATGGATAATCTGCAGGAGGCGAACGATCTCTTGCCGGAGATCTCGGAGCTGTCCTCGCCGTTCGGGACCTCGCCTGAGCGCGTCGGCGCGTACTTCGCGCACGCGCTTCAGGCCAGAGTGATAAGCTCCTGTTTGGGAACGTACTCACCCTTGACGATCAGAACGCTGAATCAAACTCAGTCGCAGAGGATGTTCAATGCTCTGCAATCCTACAATTCGATCAGTCCGTTGATCAAGTTCTCTCACTTCACCGCCAATCAAGCCATCTTCCAAGCCTTGGACGGGGAAGATCGAGTCCACGTTATCGACCTCGACGTAATGCAAGGTCTTCAATGGCCTGGATTGTTCCACATCCTCGCCTCCCGCCCTAAGAAAATCCAATCCCTACGAATCTCCGGCTTCGGATCCTCTTCCGATTTGCTCCAATCGACCGGGCGGAGACTCGCGGATTTCGCAAGCTCCCTCGGACTCCCGTTCGAGTTCCATCCAGTGGAAGGCAAAATCGGAAACCTAACGGACCCTAACCAACTGGAATTGAGGCCCGGCGAGGCTCTGGTCGTTCACTGGATGCAGCATTGCTTGTACGACATAACCGGCAGCGATTTAGGTACGCTGAGATTGCTTTCAACCCTAAAACCTAAACTGATCACCATTGTCGAACAGGATTTGAGCCATGGGGGCAGTTTTCTAGGAAGATTCGTCGAAGCTCTTCATTATTACAGCGCGTTGTTCGACGCGCTCGGCGATAGTTTGGCCATGGATAGCCTCGAAAGGCATGTGGTGGAGCAGCAATTGTTCGGCTGTGAGATTAGGAACATTATCGCCGTTGGTGGACCCAAACGAACTGGCGAAGTGAAGGTGGAGAGATGGGGCGATGAACTCAAACGGGTCGGGTTTCGACCCGTTTCTCTTGGGGGAAACCCGGCTGCTCAGGCCAGTTTGCTTCTGGGTATGTTCCCTTGGAAAGGCTATACTCTGGTTGAAGAAAATGGCTGCCTCAAGCTTGGCTGGAAGGATCTATCTCTGCTCACAGCCTCAGCCTGGCAGCCCTCTGATGATTGA 1353 54.84 MLRSLIPQSPINSTSNSHSNSMKSKRSDRDPADADSTADDPSAKRFNSALTNFDAGGSGEKPVEDEEEEEEEPLVEGSESTGLRLLGLLLQCAECVAMDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLTIRTLNQTQSQRMFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGSSSDLLQSTGRRLADFASSLGLPFEFHPVEGKIGNLTDPNQLELRPGEALVVHWMQHCLYDITGSDLGTLRLLSTLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLAMDSLERHVVEQQLFGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFRPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSDD 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7034276 7035628 + Maker00004189 Lcy6g0725 635169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0725 450 MobiDBLite consensus disorder prediction 1 21 - -
Lcy6g0725 450 MobiDBLite consensus disorder prediction 22 40 - -
Lcy6g0725 450 MobiDBLite consensus disorder prediction 61 76 - -
Lcy6g0725 450 MobiDBLite consensus disorder prediction 1 79 - -
Lcy6g0725 450 ProSiteProfiles GRAS family profile. 76 446 IPR005202 -
Lcy6g0725 450 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 65 445 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
Lcy6g0725 450 Pfam GRAS domain family 87 446 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1654 Lcy-Chr1:17031307 Lcy6g0725 Lcy-Chr6:7034276 4.81E-158 dispersed
Lcy3g1297 Lcy-Chr3:39124403 Lcy6g0725 Lcy-Chr6:7034276 5.08E-105 dispersed
Lcy6g0725 Lcy-Chr6:7034276 Lcy9g0957 Lcy-Chr9:32038209 8.06E-56 dispersed
Lcy6g0725 Lcy-Chr6:7034276 Lcy6g1910 Lcy-Chr6:40069776 5.66E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20261 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0725 K27742 - csv:101212169 721.079