Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0737 ATGAAGATTATCAATCATAATCTCCTCACAAACATTGCTCTCTCTTCTCTCATCCCTCTCCTTGCTTTCCTCCTCATCAATCCCGCCACTCGCTTTCTCTCCGACCTCGAGTTTTCCTTCCTCCGCCACCTCGTCGACTGCCATCATCATCACCACCACCACCGTCACCACTACCATCACCATCATCACCATCACAAAAGTCCGACGGACGAAGAAGACCAAGCAACCATCAGTTCCATTTGCGACACGTTCCCAACCAACCTTCTCCCACCAGAAACCACCAACACTTCTGTTTTCTGCGTCGATCGGAACGGTTGTTGCAACTTCACGACGGTTCAGGCTGCAGTCGACTCCGTACCGAACCTGAGCCCGAAACGGAGCGTGATATGGATCAACAGTGGAATCTACTATGAGAAGGTGATGGTTCCAAGATCAAAACCGAACGTGACATTTCAAGGACAAGGCTACACGACCACGGCCATTGTTTGGAACGACACTGCCAACTCTTCGCATGGGACTTTTTACAGTGGCTCTGTTCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGACGTCGGAGCGCAGGCGGTGGCGATCAGAATCGGCGGGGACCAGGCGGCGTTTTGGAGCTGCGGATTCTTCGGCGCCCAAGACACTCTCCACGACGATCGCGGCCGCCATTACTTCAAGGATTGCTACATTCAAGGCTCCATCGATTTCATCTTCGGCAACGGAAGATCCTTCTACGAGGGTTGCCAGTTGATTTCGATGGCGAATCCGGTGCCTCAAGGATCGAAGTTCGTGAACGGAGCAGTGACGGCGCACGGCAGAGCCTCCGCCGAGGAGAACTCTGGATTTGCGTTTGTTAATTGCAGCATCGGTGGGACCGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTCGCCAACACCGTCATGACGGATATTATTGCGTCGGAGGGGTGGAATGACTTTAATGACCCTGCCAGAGACCAGACAGTGTTCTATGGAGAGTACAACTGCAGTGGAGCAGGAGCCAATCTGACTGCAAGGGCTCCATTTGTTCAGAGGCTCAATGATACACTAGCTTCCCCTTTCCTCAACTTATCCTTCATTGATGCTGACCAATGGCTCCAACCCTATTAA 1200 52.75 MKIINHNLLTNIALSSLIPLLAFLLINPATRFLSDLEFSFLRHLVDCHHHHHHHRHHYHHHHHHHKSPTDEEDQATISSICDTFPTNLLPPETTNTSVFCVDRNGCCNFTTVQAAVDSVPNLSPKRSVIWINSGIYYEKVMVPRSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGDVGAQAVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYEGCQLISMANPVPQGSKFVNGAVTAHGRASAEENSGFAFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIASEGWNDFNDPARDQTVFYGEYNCSGAGANLTARAPFVQRLNDTLASPFLNLSFIDADQWLQPY 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7166923 7173215 + Maker00004228 Lcy6g0737 635181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0737 399 FunFam Pectinesterase 93 399 - -
Lcy6g0737 399 SUPERFAMILY Pectin lyase-like 97 398 IPR011050 -
Lcy6g0737 399 Gene3D - 97 399 IPR012334 -
Lcy6g0737 399 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Lcy6g0737 399 Pfam Pectinesterase 101 391 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy6g0737 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 74 397 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0365 Lcy-Chr12:4434337 Lcy6g0737 Lcy-Chr6:7166923 9.76E-68 dispersed
Lcy2g0872 Lcy-Chr2:7954959 Lcy6g0737 Lcy-Chr6:7166923 3.28E-72 dispersed
Lcy5g0337 Lcy-Chr5:3382607 Lcy6g0737 Lcy-Chr6:7166923 2.24E-129 dispersed
Lcy6g0737 Lcy-Chr6:7166923 Lcy9g1120 Lcy-Chr9:35112843 7.41E-83 dispersed
Lcy6g0737 Lcy-Chr6:7166923 Lcy4g1777 Lcy-Chr4:43837242 1.30E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0737 - - - 0.0