Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g0748 | ATGTTCTCCGCCGTCGTCGCCACCGCCTTCTTCTTTCTCTTCTTCTTCCATTCCCTCTTCAAATTATCCGCCGCCGCCCGCCGGAAACTTCCCCTTCCGCCGGGCTCAATGGGCTGGCCTTACATGGGTGAAACCCTCCAACTCTACTCTCAAGATCCCAATATCTTCTTTGCCTCCAAAAAGAAGAGGTATGGTCCTATTTTCAAGTCCCACATATTGGGTTATCCTTGTGTGATGGTTTCAAGCCCTGAAGCTGTCAAGTTTGTGTTGGTGACTAAAGCTCATCTCTTTAAGCCTACATTTCCAGCTAGTAAAGAGAGGATGTTGGGCAAAAATGCTATCTTCTTTCACCAAGGTGATTACCATGCCAAATTGAGGCGCCTCGTCCTCCGAACTTTCATGCCCAAGGCCATCAGAAACATCGTCCCGACCATCGAGTCCATTGCCAAGAACACCGTTCAATCTTGGGATGGCCAATTGATCAACACCTTCCAAGAAATGAAGATGTTCGCATTCGAGGTTTCGTTGCTTTCGATATTCGGAAAAGATGAAGCTCTTTACTTCGAAGACCTCAAGCGATGCTACTACATTCTCGAAAAAGGCTACAATTCGATGCCGATAAACTTGCCCGGAACACTATTCCACAAGGCCATGAAAGCAAGGAAGGAACTAGCACATATCTTGAACAAGATCCTCACAACCAGGAGGGAAATGAAGCGCGACTACAACGACCTCCTCGGATCTTTCATGGGTGAAAAGGAAGGCCTCACCGATGAACAGATCGCCGATAACGTCATCGGTCTCATTTTCGCCGCTCGCGACACGACCGCCAGTGTTCTAACATGGATCTTGAAGTACCTAGGAGAAAACCCAAGTGTTCTTCAAGCTGTCACTGCTGAACAAGAAGCAATAATGAAAGAAAAACAGAGTGGAGATGATAATCTCACCTGGGCTGACACCAAAAACATGCCAATCACTTCAAGGGTGATTCAAGAAACTCTAAGAGTGGCCTCAGTTTTATCATTTACTTTCAGAGAAGCAGTGGAAGATGTTGAATTTGATGGATATTTGATCCCAAAAGGATGGAAAGTTTTGCCTCTCTTCAGAAACATTCATCACAGCCCAGAAATTTTCCCTCAGCCTGAAAAGTTTGATCCTTCAAGATTTGAGGTTGCTCAAAAACCCAATACTTACATACCATTTGGCAATGGGACCCACTCCTGTCCAGGAAATGAATTAGCCAAGCTGGAGATGCTGGTTCTACTCCATCATTTAACCACCAAGTACAGGTGGGTAAATTTTCTTTGTTCCGTTCGCAGTTATCCAAACATGTTTTCACTGAATTCGAAGGAAACCCAGAACGAGTTTCGAAATGGGTGGAATGTAGTGGGAGAACAAGAAGGGATTCAATATGGTCCATTTGCTCTTCCACACAATGGATTGCCCATTAGAATCTCTCTAAAGAAGTAA | 1470 | 45.03 | MFSAVVATAFFFLFFFHSLFKLSAAARRKLPLPPGSMGWPYMGETLQLYSQDPNIFFASKKKRYGPIFKSHILGYPCVMVSSPEAVKFVLVTKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRTFMPKAIRNIVPTIESIAKNTVQSWDGQLINTFQEMKMFAFEVSLLSIFGKDEALYFEDLKRCYYILEKGYNSMPINLPGTLFHKAMKARKELAHILNKILTTRREMKRDYNDLLGSFMGEKEGLTDEQIADNVIGLIFAARDTTASVLTWILKYLGENPSVLQAVTAEQEAIMKEKQSGDDNLTWADTKNMPITSRVIQETLRVASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSPEIFPQPEKFDPSRFEVAQKPNTYIPFGNGTHSCPGNELAKLEMLVLLHHLTTKYRWVNFLCSVRSYPNMFSLNSKETQNEFRNGWNVVGEQEGIQYGPFALPHNGLPIRISLKK | 489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 7341124 | 7344217 | + | Maker00029812 | Lcy6g0748 | 635192 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g0748 | 489 | CDD | CYP90-like | 62 | 486 | - | - | |
| Lcy6g0748 | 489 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 401 | 410 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | P450 superfamily signature | 328 | 339 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | P450 superfamily signature | 271 | 288 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | P450 superfamily signature | 399 | 408 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | P450 superfamily signature | 408 | 419 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | SUPERFAMILY | Cytochrome P450 | 27 | 432 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | FunFam | Abscisic acid 8 | 22 | 457 | - | - | |
| Lcy6g0748 | 489 | Pfam | Cytochrome P450 | 33 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PANTHER | CYTOCHROME P450 26 | 31 | 435 | - | GO:0004497(PANTHER)|GO:0009687(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| Lcy6g0748 | 489 | PRINTS | E-class P450 group I signature | 367 | 391 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | E-class P450 group I signature | 398 | 408 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | E-class P450 group I signature | 327 | 345 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | E-class P450 group I signature | 408 | 431 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | E-class P450 group I signature | 260 | 277 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | PRINTS | E-class P450 group I signature | 280 | 306 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0748 | 489 | Gene3D | Cytochrome P450 | 22 | 442 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g1118 | Lcy-Chr3:36138000 | Lcy6g0748 | Lcy-Chr6:7341124 | 9.60E-174 | dispersed | |
| Lcy6g0748 | Lcy-Chr6:7341124 | Lcy9g0964 | Lcy-Chr9:32320550 | 7.94E-91 | dispersed | |
| Lcy6g0748 | Lcy-Chr6:7341124 | Lcy9g2109 | Lcy-Chr9:45787319 | 1.43E-187 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy6g0748 | K09843 | - | csv:101212508 | 845.499 |