Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g0752 | ATGGGATCCAGTGGGAGTAAATCGTCGAGAAGTTCGCCGCCGGCGCCGCCATCGTCGTCGTCGTCGGCGGCGGTGGCTCTCTCGTGTTCTGGGAGATTCCGGAGGGGGAGATCCAAAGGCCGGAGAGTTTTCCAGTCTGCTTGCCTTGGTACGCCCTCTGGATCGCACCATAGCGACAATGACGATAATGATTGTGAAAGTGAGAACAAAAAGAATGCTCATGATTATTCATCTGCAAATCGGACTGCTCAAGCGTTAGATCAGATGAAAATCGAGGGTTACAGAAGGGTCAAAGCTGAGGAATCTGTTGAAGTGCCTTGCATTTCATCGAATGTCGAGCTTGATGGATGGAGTCAAGCAGGTGTTGCTGTAACAGCCCCCAGAGCTGGAAGTACCTCTGCTCGTGCATCCTCCCTTCAGTCGTTGAACCCTTCGAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTAAGCTTCAGATTGAGTAGAGCAAACAGTTTAGGATCATCTAGGTCTTATCCTATGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCTTCATTTATCAGACAGACCTGCCAGAGGCTTGGGTGATAGAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCGTCACTAGCTAGGGCAACTCCTACTCAAGGTCATGGAGATAGTCCTGCTAATTTTAGGTTAAATACACAAGCTTCTGGTCTTTCTGATAACTTACAAGACAATCAGGCAGTTTCTTCTACCCATGACATGGCTGGTGTTTGTGATAATGCAAGAGTAGAGCCTGATGGAAACCTTTCCCATCCTCGAACTCTACCTGAAGATGATAGCAGTGAGATTAGACAATCTGACAGACGGACTGGATCTAGGGAACCAGTTGAACGCAATTTTCGTTTCAGTCGGACCCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTAGATCATCATTATCTGACTTCACATTTTGTCCTCAGCAACAAGAGGGAGAGGAGAGAAATGCTAGTCAGAGTGGTGATGACCGACATGTCTGGACTGCGGAGACAAGGGCTTTGTCATCTGAAGATAATGCTATGACCTCTCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCTAGTTCCTTGTTCAGCACCCAAGATTATGAAATGGAAACTACCCGGCCTAGAGAAGCTAGATATCATGATTTGCTGGAACACCGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGTTCCCAGGTTCGTGCCCTACAGCGGTTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCATGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACCAATATAAACGATAACACCAGTGCTAGAGCTAGTATATCAAGAATTGTAATGTTAGCTGAGGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCAATTGGCTCTCTGCCTGCACCCAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTACAAAAGCATCAAAGCGAGGAAGCTGCTCAATGCTACATATGCCTGGTTGAGTACGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTCCACGCAGCATGTGTCGACAAGTGGCTGAAGGAAATTCACAGGTATTATTGGGTCCATATAGCGTCTTCTGCATCTCGAATTGTATACAATGAGCAATCATGGATGAATGCCCCATTTTCTGGGTATGCCCGCTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAAGTGAAAGTGATTCATTTCCAAAACCTGCTGTCTGTAGATCCTGGGAAATCTTGAGTGATTCTTTTTGGTTGGCTAGCAAGAATATTTTAAGGGAAAAAATGATGATGGATGGGTTTGAAAATGATGCTGAAATTCAGGTTTTTGTTCTATAA | 2019 | 45.12 | MGSSGSKSSRSSPPAPPSSSSSAAVALSCSGRFRRGRSKGRRVFQSACLGTPSGSHHSDNDDNDCESENKKNAHDYSSANRTAQALDQMKIEGYRRVKAEESVEVPCISSNVELDGWSQAGVAVTAPRAGSTSARASSLQSLNPSSNFLSRFSFIPGNVSFRLSRANSLGSSRSYPMSSTNLSMLNDEDELHLSDRPARGLGDRDETQQGRDLLPASLARATPTQGHGDSPANFRLNTQASGLSDNLQDNQAVSSTHDMAGVCDNARVEPDGNLSHPRTLPEDDSSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPQQQEGEERNASQSGDDRHVWTAETRALSSEDNAMTSPTTSGYPASSLSSSLFSTQDYEMETTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRYYWVHIASSASRIVYNEQSWMNAPFSGYARSVEGTYAADLMRYQTMSSESDSFPKPAVCRSWEILSDSFWLASKNILREKMMMDGFENDAEIQVFVL | 672 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 7404331 | 7408505 | - | Maker00029690 | Lcy6g0752 | 635196 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g0752 | 672 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 29 | - | - | |
| Lcy6g0752 | 672 | Pfam | Ring finger domain | 538 | 572 | IPR001841 | - | |
| Lcy6g0752 | 672 | MobiDBLite | consensus disorder prediction | 263 | 301 | - | - | |
| Lcy6g0752 | 672 | FunFam | Putative RING zinc finger domain superfamily protein | 507 | 579 | - | - | |
| Lcy6g0752 | 672 | MobiDBLite | consensus disorder prediction | 332 | 351 | - | - | |
| Lcy6g0752 | 672 | MobiDBLite | consensus disorder prediction | 57 | 75 | - | - | |
| Lcy6g0752 | 672 | SUPERFAMILY | RING/U-box | 517 | 573 | - | - | |
| Lcy6g0752 | 672 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 501 | 576 | IPR013083 | - | |
| Lcy6g0752 | 672 | ProSiteProfiles | Zinc finger RING-type profile. | 539 | 569 | IPR001841 | - | |
| Lcy6g0752 | 672 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
| Lcy6g0752 | 672 | MobiDBLite | consensus disorder prediction | 276 | 301 | - | - | |
| Lcy6g0752 | 672 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Lcy6g0752 | 672 | MobiDBLite | consensus disorder prediction | 359 | 381 | - | - | |
| Lcy6g0752 | 672 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 575 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0141 | Lcy-Chr2:1117976 | Lcy6g0752 | Lcy-Chr6:7404331 | 9.69E-39 | dispersed | |
| Lcy6g0752 | Lcy-Chr6:7404331 | Lcy11g1812 | Lcy-Chr11:41901307 | 3.51E-06 | transposed |
Pathway information