Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0752 ATGGGATCCAGTGGGAGTAAATCGTCGAGAAGTTCGCCGCCGGCGCCGCCATCGTCGTCGTCGTCGGCGGCGGTGGCTCTCTCGTGTTCTGGGAGATTCCGGAGGGGGAGATCCAAAGGCCGGAGAGTTTTCCAGTCTGCTTGCCTTGGTACGCCCTCTGGATCGCACCATAGCGACAATGACGATAATGATTGTGAAAGTGAGAACAAAAAGAATGCTCATGATTATTCATCTGCAAATCGGACTGCTCAAGCGTTAGATCAGATGAAAATCGAGGGTTACAGAAGGGTCAAAGCTGAGGAATCTGTTGAAGTGCCTTGCATTTCATCGAATGTCGAGCTTGATGGATGGAGTCAAGCAGGTGTTGCTGTAACAGCCCCCAGAGCTGGAAGTACCTCTGCTCGTGCATCCTCCCTTCAGTCGTTGAACCCTTCGAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTAAGCTTCAGATTGAGTAGAGCAAACAGTTTAGGATCATCTAGGTCTTATCCTATGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCTTCATTTATCAGACAGACCTGCCAGAGGCTTGGGTGATAGAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCGTCACTAGCTAGGGCAACTCCTACTCAAGGTCATGGAGATAGTCCTGCTAATTTTAGGTTAAATACACAAGCTTCTGGTCTTTCTGATAACTTACAAGACAATCAGGCAGTTTCTTCTACCCATGACATGGCTGGTGTTTGTGATAATGCAAGAGTAGAGCCTGATGGAAACCTTTCCCATCCTCGAACTCTACCTGAAGATGATAGCAGTGAGATTAGACAATCTGACAGACGGACTGGATCTAGGGAACCAGTTGAACGCAATTTTCGTTTCAGTCGGACCCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTAGATCATCATTATCTGACTTCACATTTTGTCCTCAGCAACAAGAGGGAGAGGAGAGAAATGCTAGTCAGAGTGGTGATGACCGACATGTCTGGACTGCGGAGACAAGGGCTTTGTCATCTGAAGATAATGCTATGACCTCTCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCTAGTTCCTTGTTCAGCACCCAAGATTATGAAATGGAAACTACCCGGCCTAGAGAAGCTAGATATCATGATTTGCTGGAACACCGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGTTCCCAGGTTCGTGCCCTACAGCGGTTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCATGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACCAATATAAACGATAACACCAGTGCTAGAGCTAGTATATCAAGAATTGTAATGTTAGCTGAGGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCAATTGGCTCTCTGCCTGCACCCAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTACAAAAGCATCAAAGCGAGGAAGCTGCTCAATGCTACATATGCCTGGTTGAGTACGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTCCACGCAGCATGTGTCGACAAGTGGCTGAAGGAAATTCACAGGTATTATTGGGTCCATATAGCGTCTTCTGCATCTCGAATTGTATACAATGAGCAATCATGGATGAATGCCCCATTTTCTGGGTATGCCCGCTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAAGTGAAAGTGATTCATTTCCAAAACCTGCTGTCTGTAGATCCTGGGAAATCTTGAGTGATTCTTTTTGGTTGGCTAGCAAGAATATTTTAAGGGAAAAAATGATGATGGATGGGTTTGAAAATGATGCTGAAATTCAGGTTTTTGTTCTATAA 2019 45.12 MGSSGSKSSRSSPPAPPSSSSSAAVALSCSGRFRRGRSKGRRVFQSACLGTPSGSHHSDNDDNDCESENKKNAHDYSSANRTAQALDQMKIEGYRRVKAEESVEVPCISSNVELDGWSQAGVAVTAPRAGSTSARASSLQSLNPSSNFLSRFSFIPGNVSFRLSRANSLGSSRSYPMSSTNLSMLNDEDELHLSDRPARGLGDRDETQQGRDLLPASLARATPTQGHGDSPANFRLNTQASGLSDNLQDNQAVSSTHDMAGVCDNARVEPDGNLSHPRTLPEDDSSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPQQQEGEERNASQSGDDRHVWTAETRALSSEDNAMTSPTTSGYPASSLSSSLFSTQDYEMETTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRYYWVHIASSASRIVYNEQSWMNAPFSGYARSVEGTYAADLMRYQTMSSESDSFPKPAVCRSWEILSDSFWLASKNILREKMMMDGFENDAEIQVFVL 672
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 7404331 7408505 - Maker00029690 Lcy6g0752 635196
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0752 672 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Lcy6g0752 672 Pfam Ring finger domain 538 572 IPR001841 -
Lcy6g0752 672 MobiDBLite consensus disorder prediction 263 301 - -
Lcy6g0752 672 FunFam Putative RING zinc finger domain superfamily protein 507 579 - -
Lcy6g0752 672 MobiDBLite consensus disorder prediction 332 351 - -
Lcy6g0752 672 MobiDBLite consensus disorder prediction 57 75 - -
Lcy6g0752 672 SUPERFAMILY RING/U-box 517 573 - -
Lcy6g0752 672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 576 IPR013083 -
Lcy6g0752 672 ProSiteProfiles Zinc finger RING-type profile. 539 569 IPR001841 -
Lcy6g0752 672 MobiDBLite consensus disorder prediction 1 81 - -
Lcy6g0752 672 MobiDBLite consensus disorder prediction 276 301 - -
Lcy6g0752 672 MobiDBLite consensus disorder prediction 1 27 - -
Lcy6g0752 672 MobiDBLite consensus disorder prediction 359 381 - -
Lcy6g0752 672 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 575 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0141 Lcy-Chr2:1117976 Lcy6g0752 Lcy-Chr6:7404331 9.69E-39 dispersed
Lcy6g0752 Lcy-Chr6:7404331 Lcy11g1812 Lcy-Chr11:41901307 3.51E-06 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0752 - - - 0.0