Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0777 ATGAACGAGCCAGATTCCGACCACCCATCTCCCTTTTTCCCCAAATCCACCCATCGTTCCAGCGCCGACGACCGAACCCCACTCATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCGTTTGCTTCCAACCCCATGTCCCCTTTTCTGGTTTCCACCTCCGATCATCTTGGTTCCCCTCTTTGGGCCTTCTCTGAGGCCGATGATGACGACGATTCCAAGTTTGCTGCCTATGCTTGCTCTGTTCTTGTTTTGATGTCTGCTAATGCCATTGGTACTTCCAATTCGAATTCTGCACCGCAAAAGCCGACCGAGAACCACAAGTTTAAGATTCTTCCAGTTCCATCTTCAACATGGGGACTAATGCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATAAAAGAATCGTCTGACCAGCATGTACTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTTCAACTTCCGGGCAACCGTTTGTCCTTGATACACAGAGCAACGGACTTCATCAGTATAGGATGGTCTCTTTGACGTATATGTTCTCTTTGGACCCCGATCCGAATGAAAATCTCGGGCTCCCCGGTCGTGTTTTCCAACAAAAATTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCACGACTTAGTCACGCTCTTCACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCAGGGCAGTCTTGTCTTGGTGTTCTCGAGCTAATCATGACTGCACCAAAGATCAATTATGCACCCGAGGTCGACAAAATCTGCAAAGCTCTTCAGGCTGTCAATCTAAAAAGTTCAGAGATTTTGGATCATCCGATTACCCAGATTTGCAATGAAGGTCGACAGCATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAACGTGCTCGCCTATGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCCGCAACTGAAGTAGCATCCTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGAGGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAGAGCGTTTTCATCCCACAGCTCATGTTTTTGTGGAGATATCACCCAATTTTGCAAGACCGAGTACCCTTTGGTACACTATGCACTCATGTTCGGATTAAAGAGCTGTTTTTCAATCTGCTTACGGAGCACGTTTACTGGAGATGATGAGTACATTCTGGAATTTTTTCTGCCACCGAGCATTGTTGATTATCAGGAACAAAAGTCTTTGTTGGGTATGTTAATGGCAACAATGAAGCAACATTTCTACACTCTCAAAGTTGCTTCTGGAATCAACCTCGAGGAGGAGGAAGGACTCGTCGAGATCGTTCAAGCATCAAGAAATGGGGGGTTTGAGTCTAGATTTGAATACATTCAAATTCCCCGACCCATGGAATTACCACCGAAGTCTGATGCCATGCCAAAAGCAAGAGAGGTAGTTGCATTAGAAACATTGCAACAGCAATCTTTAATGGTTCATGATGCCCCAAAGGACGAAACCAATACCACTCGGGATGGGGAAAGCCAGAACCCTGTTCCTTGTCCACAGAATAAGGAAGTAAAAAAGACGTCCGAAAGGAAGCGTGGAAAAGCCGAAAAATCAATTAGTCTGGAGGTTCTACAACAATACTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACATGGAATCTCACGTTGGCCATCTCGGAAGATCAACAAGGTGAATCGCTCTCTTTCAAAGCTAAAGCGCGTGATTGAATCTGTTCAAGGGGCCGAAGGAGCATTCGGAATATCTTCTCTGGCTACAAGTCCACTTCCTGTTGCTGTTAGTTCGAGTTCTCATCCTTTAACTCCGGATGGGTCTAATCAGCAAAACTTTGTTGCTTCTCAACCCTCTGATCCCCAACATAAAGAAACAAACACCTCAGAAGCGCAGACAAATGACACACGGTCTAGACAAGAAGATCAATTACATAGGGAAGTGTTGAGTCCAGAAGAACTGATTCACGAGCAGAACGGATTTCTGCCGAAGTTTGGGAATGGTTTGAACAATTTTAAAACAGGGAGTGGATCACGGGAAGAGAGCACTGGGACACCTACTTCTCATGGTTCGTGCCAAGGTAGTCCTGCAAACGACAGTGCGGCAGCAAATAATCCCAATTCTATTCCCCACCAAGAACAAATTGTCAGAAGAGAATCTCCCGAAGCAGCATTCCATCCAATGGATAAACTGAATATATCTGCACCTGCTTGTCCAATCCCGGATACGCTCGTGATGGTTGAGCCCGAGGAACCATTTGGAGGAATGCTGATTGAGGATGCAGGAAGTTCTAAGGACTTAAAAAATCTTTGCGCTTCTGTCGCTGATGCTGTTCTCGACGAGCAAGTACCCGAATTTTGTTGGACCAACCCTCCTGATATAGCTCGGAGACAACCTATGGACTCTATTTGTCACACAGTCCCTCATATATCAGTAAGGCAAGAACCAAGGAGAATGACTATCAAGGCCACTTATAAGGAAGATATCATTCGGTTTCGAATTTCCTCGAGTTCCGGTATTGTGGAGTTAAGAGAAGAAGTGGCAAAGAGATTGAAATTGGAGGTTGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTATTGCCTGCGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAAGCATCAGGTAGCAACATAATAAGATTGTTGGTTCATGATTTATCTGTCATTCTTGGGAGTTCTTGTGAGAGTACCGGGGAGTGA 3003 45.42 MNEPDSDHPSPFFPKSTHRSSADDRTPLMDFDLDLDIPWPLDQIPSFASNPMSPFLVSTSDHLGSPLWAFSEADDDDDSKFAAYACSVLVLMSANAIGTSNSNSAPQKPTENHKFKILPVPSSTWGLMPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLSTSGQPFVLDTQSNGLHQYRMVSLTYMFSLDPDPNENLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFDPSGQSCLGVLELIMTAPKINYAPEVDKICKALQAVNLKSSEILDHPITQICNEGRQHALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKSLLGMLMATMKQHFYTLKVASGINLEEEEGLVEIVQASRNGGFESRFEYIQIPRPMELPPKSDAMPKAREVVALETLQQQSLMVHDAPKDETNTTRDGESQNPVPCPQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVAVSSSSHPLTPDGSNQQNFVASQPSDPQHKETNTSEAQTNDTRSRQEDQLHREVLSPEELIHEQNGFLPKFGNGLNNFKTGSGSREESTGTPTSHGSCQGSPANDSAAANNPNSIPHQEQIVRRESPEAAFHPMDKLNISAPACPIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWTNPPDIARRQPMDSICHTVPHISVRQEPRRMTIKATYKEDIIRFRISSSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKASGSNIIRLLVHDLSVILGSSCESTGE 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7643434 7648471 - Maker00030150 Lcy6g0777 635221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0777 1000 Gene3D - 903 986 - -
Lcy6g0777 1000 ProSiteProfiles RWP-RK domain profile. 587 668 IPR003035 -
Lcy6g0777 1000 Pfam PB1 domain 906 986 IPR000270 GO:0005515(InterPro)
Lcy6g0777 1000 PANTHER PROTEIN NLP8 65 999 IPR045012 GO:0003700(InterPro)
Lcy6g0777 1000 MobiDBLite consensus disorder prediction 681 731 - -
Lcy6g0777 1000 MobiDBLite consensus disorder prediction 558 598 - -
Lcy6g0777 1000 Pfam RWP-RK domain 600 647 IPR003035 -
Lcy6g0777 1000 ProSiteProfiles PB1 domain profile. 905 987 IPR053793 -
Lcy6g0777 1000 MobiDBLite consensus disorder prediction 681 721 - -
Lcy6g0777 1000 CDD PB1_NLP 906 986 IPR034891 -
Lcy6g0777 1000 FunFam RWP-RK domain-containing protein 902 986 - -
Lcy6g0777 1000 MobiDBLite consensus disorder prediction 756 794 - -
Lcy6g0777 1000 SMART PB1_new 905 987 IPR000270 GO:0005515(InterPro)
Lcy6g0777 1000 SUPERFAMILY CAD & PB1 domains 898 988 - -
Lcy6g0777 1000 MobiDBLite consensus disorder prediction 1 25 - -
Lcy6g0777 1000 MobiDBLite consensus disorder prediction 748 794 - -
Lcy6g0777 1000 Pfam NLP protein GAF domain 308 491 IPR055081 -
Lcy6g0777 1000 Pfam NLP protein GAF domain 157 293 IPR055081 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0777 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1016 Lcy-Chr11:31045403 Lcy6g0777 Lcy-Chr6:7643434 4.29E-137 dispersed
Lcy6g0777 Lcy-Chr6:7643434 Lcy9g2321 Lcy-Chr9:47574738 5.60E-129 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g0777 . 194 1000 NLP Transcription Factor Family AT1G64530 51.4 7.7e-216 747.7
Lcy6g0777 . 273 1000 NLP Transcription Factor Family AT4G24020 54.3 1.1e-198 690.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20267 None None None None Lcy TF