Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g0783 | ATGGCTAATCGGGGAGGGGGGTCGTTTTCACCCTCAAATGTTTCGCCTCAAGGTTGGGGAGGAGATGAGCTTTACACTGAGCTATGGAAGGCCTCGGCTGGGCCGCTTGTGGAAGTTCCTCGAGTTCATGAGAAGGTTTTCTATTTTCCTCAAGGCCATATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTGAATCAGAAACTTCCTTCGTTTAATCTTTCCTCCAAAATTCTTTGTCATGTTGTTGATGTTCGGCTGCTGGCAGAGCAGGAAACAGATGAGGTTTATGCACAGATAGCTTTAATGCCAGAATCAAATCAAGAGGAACCTACAAGTGCTGATCCTTCACCTCCGGAGATTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTTCGTAAGCATGCCACTGAATGCTTGCCTCCATTGGATATGACCCAGCAGACCCCGACTCAGGAACTTGTAGCCAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATTTTTAGGGGTCAACCGCGAAGGCATTTGCTAACGACCGGTTGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGAGAGTTGCGAGTTGGAGTGAGACGTCTTGCTCGCCAACAAAGCAGCATGCCCTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCATCAGCTTGAATAAGTACATGGAAGCGATGAACAGTAAGTTCTTAGTGGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTCTCGGGCACGATAGTTGGAGTTGACGACATATCTCCTCACTGGCCTAATTCGAAATGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTGTTCATAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCGAGCATTCCGCAATCAGTTTCCGTAAAAAATAAAAGGCCTCGGCCTCCACTTGATATTCCAGATTCTGATAATTCAACCGTAACAACTCTACGACATCCGGGATCAACCCAATCGCATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGACATTAAAAGATTTGAAAATCATGCAACTTGGCATTACAAGCAAACGGATGTCAGCAGCAATGGGAATTCCGTATCAAGGACACTGAACGAGGGTTCTTGGTTAACTTCCCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGATTTGACAGAGGACCGTAAAAGTAATTCTGTTTGGTCGACGGTCTTCCCAGGAGCGCCAACAGCACACTCGACATGTCCGACTCCACGCACGCCAAATCTGAAGAGTGACCAAGTACATGATCTTGGGGAAAGGGGGAGGAAAACTGAGGTGGCTCCGAGTTGTCGCTTGTTTGGGATCGAGCTCATTAATCATTCTAAGAGCCCAGTTCCACCTGAAAGGGCAGCTGATCAATCGATTGGCGCGCCAAATGGAAGTACTGAAAGCCATATCAATACCTTGCTATCATCTAATGCAGAGCAGAACTCAGACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGCACCTCCTAAAGAGATCCAGCACAAACAGAACGGCTCGACCAACAGCCGAAGCCGTACCAAGGTTCAAATGCAAGGGATGGCTGTTGGACGTGCGGTGGACCTTACAACTTTGGATGGGTATGGCCAACTCATTGATGAACTCGAAAAGATGTTCGATATCAAGGGAGAACTTCGCCCTCGTGATAAGTGGGAGATTGTCTTCACTGATGATGAAGGAGATACAATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCAAGTCAAGATGTGAAGATGAGTTCGGGTAGCAAGCTTACGATGTCTACAATCGAATGTGATGGGACGGTAATAACCTCGGAGTCGGCTGATAGCTGA | 2124 | 46.99 | MANRGGGSFSPSNVSPQGWGGDELYTELWKASAGPLVEVPRVHEKVFYFPQGHMEQLEASTNQELNQKLPSFNLSSKILCHVVDVRLLAEQETDEVYAQIALMPESNQEEPTSADPSPPEIRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIISLNKYMEAMNSKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISPHWPNSKWRSLRIQWDELASVHRPDRVSPWEIEPFVAPTSPSIPQSVSVKNKRPRPPLDIPDSDNSTVTTLRHPGSTQSHDDRTQLSVAAADIKRFENHATWHYKQTDVSSNGNSVSRTLNEGSWLTSPNGSVSQHRLQDLTEDRKSNSVWSTVFPGAPTAHSTCPTPRTPNLKSDQVHDLGERGRKTEVAPSCRLFGIELINHSKSPVPPERAADQSIGAPNGSTESHINTLLSSNAEQNSDLPKASKERKLGLLQAPPKEIQHKQNGSTNSRSRTKVQMQGMAVGRAVDLTTLDGYGQLIDELEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLTMSTIECDGTVITSESADS | 707 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7804027 | 7808273 | - | Maker00029770 | Lcy6g0783 | 635227 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g0783 | 707 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 23 | 683 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lcy6g0783 | 707 | CDD | B3_DNA | 127 | 229 | IPR003340 | GO:0003677(InterPro) | |
Lcy6g0783 | 707 | ProSiteProfiles | PB1 domain profile. | 596 | 677 | IPR053793 | - | |
Lcy6g0783 | 707 | MobiDBLite | consensus disorder prediction | 585 | 600 | - | - | |
Lcy6g0783 | 707 | SUPERFAMILY | CAD & PB1 domains | 594 | 672 | - | - | |
Lcy6g0783 | 707 | MobiDBLite | consensus disorder prediction | 384 | 405 | - | - | |
Lcy6g0783 | 707 | MobiDBLite | consensus disorder prediction | 481 | 496 | - | - | |
Lcy6g0783 | 707 | FunFam | Auxin response factor | 290 | 361 | - | - | |
Lcy6g0783 | 707 | MobiDBLite | consensus disorder prediction | 481 | 508 | - | - | |
Lcy6g0783 | 707 | Gene3D | - | 126 | 230 | IPR015300 | - | |
Lcy6g0783 | 707 | MobiDBLite | consensus disorder prediction | 529 | 551 | - | - | |
Lcy6g0783 | 707 | MobiDBLite | consensus disorder prediction | 362 | 405 | - | - | |
Lcy6g0783 | 707 | FunFam | Auxin response factor | 127 | 231 | - | - | |
Lcy6g0783 | 707 | Gene3D | - | 591 | 683 | - | - | |
Lcy6g0783 | 707 | Gene3D | - | 290 | 361 | - | - | |
Lcy6g0783 | 707 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Lcy6g0783 | 707 | Pfam | AUX/IAA family | 584 | 632 | IPR033389 | - | |
Lcy6g0783 | 707 | Pfam | AUX/IAA family | 643 | 679 | IPR033389 | - | |
Lcy6g0783 | 707 | SMART | B3_2 | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Lcy6g0783 | 707 | Pfam | Auxin response factor | 255 | 333 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lcy6g0783 | 707 | Pfam | B3 DNA binding domain | 129 | 229 | IPR003340 | GO:0003677(InterPro) | |
Lcy6g0783 | 707 | MobiDBLite | consensus disorder prediction | 578 | 600 | - | - | |
Lcy6g0783 | 707 | SUPERFAMILY | DNA-binding pseudobarrel domain | 120 | 258 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1556 | Lcy-Chr12:35503175 | Lcy6g0783 | Lcy-Chr6:7804027 | 1.96E-298 | dispersed | |
Lcy2g0013 | Lcy-Chr2:133246 | Lcy6g0783 | Lcy-Chr6:7804027 | 6.27E-188 | dispersed | |
Lcy5g1695 | Lcy-Chr5:39392044 | Lcy6g0783 | Lcy-Chr6:7804027 | 1.56E-112 | dispersed | |
Lcy6g0783 | Lcy-Chr6:7804027 | Lcy7g1941 | Lcy-Chr7:45650767 | 9.14E-147 | dispersed | |
Lcy6g0783 | Lcy-Chr6:7804027 | Lcy4g0845 | Lcy-Chr4:11328680 | 9.24E-256 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20268 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g0783 | K14486 | - | csv:101213942 | 1207.2 |