Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0783 ATGGCTAATCGGGGAGGGGGGTCGTTTTCACCCTCAAATGTTTCGCCTCAAGGTTGGGGAGGAGATGAGCTTTACACTGAGCTATGGAAGGCCTCGGCTGGGCCGCTTGTGGAAGTTCCTCGAGTTCATGAGAAGGTTTTCTATTTTCCTCAAGGCCATATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTGAATCAGAAACTTCCTTCGTTTAATCTTTCCTCCAAAATTCTTTGTCATGTTGTTGATGTTCGGCTGCTGGCAGAGCAGGAAACAGATGAGGTTTATGCACAGATAGCTTTAATGCCAGAATCAAATCAAGAGGAACCTACAAGTGCTGATCCTTCACCTCCGGAGATTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTTCGTAAGCATGCCACTGAATGCTTGCCTCCATTGGATATGACCCAGCAGACCCCGACTCAGGAACTTGTAGCCAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATTTTTAGGGGTCAACCGCGAAGGCATTTGCTAACGACCGGTTGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGAGAGTTGCGAGTTGGAGTGAGACGTCTTGCTCGCCAACAAAGCAGCATGCCCTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCATCAGCTTGAATAAGTACATGGAAGCGATGAACAGTAAGTTCTTAGTGGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTCTCGGGCACGATAGTTGGAGTTGACGACATATCTCCTCACTGGCCTAATTCGAAATGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTGTTCATAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCGAGCATTCCGCAATCAGTTTCCGTAAAAAATAAAAGGCCTCGGCCTCCACTTGATATTCCAGATTCTGATAATTCAACCGTAACAACTCTACGACATCCGGGATCAACCCAATCGCATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGACATTAAAAGATTTGAAAATCATGCAACTTGGCATTACAAGCAAACGGATGTCAGCAGCAATGGGAATTCCGTATCAAGGACACTGAACGAGGGTTCTTGGTTAACTTCCCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGATTTGACAGAGGACCGTAAAAGTAATTCTGTTTGGTCGACGGTCTTCCCAGGAGCGCCAACAGCACACTCGACATGTCCGACTCCACGCACGCCAAATCTGAAGAGTGACCAAGTACATGATCTTGGGGAAAGGGGGAGGAAAACTGAGGTGGCTCCGAGTTGTCGCTTGTTTGGGATCGAGCTCATTAATCATTCTAAGAGCCCAGTTCCACCTGAAAGGGCAGCTGATCAATCGATTGGCGCGCCAAATGGAAGTACTGAAAGCCATATCAATACCTTGCTATCATCTAATGCAGAGCAGAACTCAGACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGCACCTCCTAAAGAGATCCAGCACAAACAGAACGGCTCGACCAACAGCCGAAGCCGTACCAAGGTTCAAATGCAAGGGATGGCTGTTGGACGTGCGGTGGACCTTACAACTTTGGATGGGTATGGCCAACTCATTGATGAACTCGAAAAGATGTTCGATATCAAGGGAGAACTTCGCCCTCGTGATAAGTGGGAGATTGTCTTCACTGATGATGAAGGAGATACAATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCAAGTCAAGATGTGAAGATGAGTTCGGGTAGCAAGCTTACGATGTCTACAATCGAATGTGATGGGACGGTAATAACCTCGGAGTCGGCTGATAGCTGA 2124 46.99 MANRGGGSFSPSNVSPQGWGGDELYTELWKASAGPLVEVPRVHEKVFYFPQGHMEQLEASTNQELNQKLPSFNLSSKILCHVVDVRLLAEQETDEVYAQIALMPESNQEEPTSADPSPPEIRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIISLNKYMEAMNSKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISPHWPNSKWRSLRIQWDELASVHRPDRVSPWEIEPFVAPTSPSIPQSVSVKNKRPRPPLDIPDSDNSTVTTLRHPGSTQSHDDRTQLSVAAADIKRFENHATWHYKQTDVSSNGNSVSRTLNEGSWLTSPNGSVSQHRLQDLTEDRKSNSVWSTVFPGAPTAHSTCPTPRTPNLKSDQVHDLGERGRKTEVAPSCRLFGIELINHSKSPVPPERAADQSIGAPNGSTESHINTLLSSNAEQNSDLPKASKERKLGLLQAPPKEIQHKQNGSTNSRSRTKVQMQGMAVGRAVDLTTLDGYGQLIDELEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLTMSTIECDGTVITSESADS 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7804027 7808273 - Maker00029770 Lcy6g0783 635227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0783 707 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 683 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy6g0783 707 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Lcy6g0783 707 ProSiteProfiles PB1 domain profile. 596 677 IPR053793 -
Lcy6g0783 707 MobiDBLite consensus disorder prediction 585 600 - -
Lcy6g0783 707 SUPERFAMILY CAD & PB1 domains 594 672 - -
Lcy6g0783 707 MobiDBLite consensus disorder prediction 384 405 - -
Lcy6g0783 707 MobiDBLite consensus disorder prediction 481 496 - -
Lcy6g0783 707 FunFam Auxin response factor 290 361 - -
Lcy6g0783 707 MobiDBLite consensus disorder prediction 481 508 - -
Lcy6g0783 707 Gene3D - 126 230 IPR015300 -
Lcy6g0783 707 MobiDBLite consensus disorder prediction 529 551 - -
Lcy6g0783 707 MobiDBLite consensus disorder prediction 362 405 - -
Lcy6g0783 707 FunFam Auxin response factor 127 231 - -
Lcy6g0783 707 Gene3D - 591 683 - -
Lcy6g0783 707 Gene3D - 290 361 - -
Lcy6g0783 707 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Lcy6g0783 707 Pfam AUX/IAA family 584 632 IPR033389 -
Lcy6g0783 707 Pfam AUX/IAA family 643 679 IPR033389 -
Lcy6g0783 707 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Lcy6g0783 707 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy6g0783 707 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
Lcy6g0783 707 MobiDBLite consensus disorder prediction 578 600 - -
Lcy6g0783 707 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1556 Lcy-Chr12:35503175 Lcy6g0783 Lcy-Chr6:7804027 1.96E-298 dispersed
Lcy2g0013 Lcy-Chr2:133246 Lcy6g0783 Lcy-Chr6:7804027 6.27E-188 dispersed
Lcy5g1695 Lcy-Chr5:39392044 Lcy6g0783 Lcy-Chr6:7804027 1.56E-112 dispersed
Lcy6g0783 Lcy-Chr6:7804027 Lcy7g1941 Lcy-Chr7:45650767 9.14E-147 dispersed
Lcy6g0783 Lcy-Chr6:7804027 Lcy4g0845 Lcy-Chr4:11328680 9.24E-256 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20268 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0783 K14486 - csv:101213942 1207.2