Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0809 ATGGATTACAAAATGCAACAAGAATTAAACAATCCCCAATTCCTTTCCGATTCCAAAAGCGCCGCCGACATCAGAACATTGCTCTCCAATCTTCTCCTTTCTCGCCAATCCACCAACACTCTGGATTCCATCTTCTCTCACTGTCTGCCGTCCACCACCGCCGCCGTCAACCCTTTGCCGGAGGCGGCGTTGGGTTCGTCGGTGTATCTCCGGCAGAGAGATCTGGTCAACAAATTCTGCGTAGAGAACCACCACGGCTGCTCGCTGGCGAACCTGCAGCAGCAGCAGCTGCACCACCATCCGGTTGAAATTTCCGGCGGATATGGGGGTTTTCCGGCGGCGGCAAAGAAGAAGCTGTACAGGGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTGGCGGAGATTAGGCTGCCGCAGAACAGAATGAGGGTTTGGTTGGGGACCTACGACACGGCGGAGGCCGCCGCCTACGCCTACGACAGGGCGGCGTATAAGCTCAGAGGCGAATATGCGAGGCTGAATTTTCCGAATTTGAAGGATTTTAGGAATTTGGGATTCGCCGATTGCGGCCGATTGAATGCTCTGAAAAACTCTGTTGATGCTAAAATTCAAGCAATTTGTTTGAAGATGAAGAGGGAAAGGGCTAAAAAGAGTGGCAAGAAATTGGATCCCAAAAACGGCGCCGTTTCCGAGTCGTCGGCGGCGGTGGAGTGGTGTTGGAGCAGTGAAATGGGGTGTTCATCGGCGGTTTCTGAAGATGGGTTTTGGAGATCGGAGAATTCTCCGCCGCCGTCGTCGTCATCCGGCTCGGCGGAGTCGGCGGCGGCGATGGCGGAGGCGGTGGTCGGGGAAGGGTACTCTTCACTGGCGAAGATGCCGTCTTTTGATCCCGATTTGATCTGGGAAGTTCTAGCAAATTAA 921 54.29 MDYKMQQELNNPQFLSDSKSAADIRTLLSNLLLSRQSTNTLDSIFSHCLPSTTAAVNPLPEAALGSSVYLRQRDLVNKFCVENHHGCSLANLQQQQLHHHPVEISGGYGGFPAAAKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDFRNLGFADCGRLNALKNSVDAKIQAICLKMKRERAKKSGKKLDPKNGAVSESSAAVEWCWSSEMGCSSAVSEDGFWRSENSPPPSSSSGSAESAAAMAEAVVGEGYSSLAKMPSFDPDLIWEVLAN 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8094494 8095414 + Maker00029871 Lcy6g0809 635253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0809 306 Gene3D AP2/ERF domain 119 177 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0809 306 FunFam Ethylene-responsive transcription factor 2 118 177 - -
Lcy6g0809 306 SMART rav1_2 119 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0809 306 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 66 305 IPR051758 -
Lcy6g0809 306 MobiDBLite consensus disorder prediction 253 274 - -
Lcy6g0809 306 SUPERFAMILY DNA-binding domain 119 176 IPR016177 GO:0003677(InterPro)
Lcy6g0809 306 CDD AP2 118 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0809 306 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0809 306 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0809 306 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0809 306 MobiDBLite consensus disorder prediction 253 273 - -
Lcy6g0809 306 Pfam AP2 domain 119 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1578 Lcy-Chr13:34614837 Lcy6g0809 Lcy-Chr6:8094494 9.60E-36 dispersed
Lcy6g0809 Lcy-Chr6:8094494 Lcy9g1599 Lcy-Chr9:41162444 6.68E-35 dispersed
Lcy12g1572 Lcy-Chr12:35792480 Lcy6g0809 Lcy-Chr6:8094494 6.61E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20270 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0809 - - - 0.0