Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0832 ATGGCGGCGGGGAATGCGACGGCGGCCGGCAGCTGTCCGGCGGCGATGAAAGCGACGTCCAACGGAGTGTTTCAGGGCGACAACCCGCTCGATTTCGCTCTTCCTTTGGCGATTCTTCAGATATGTTTGGTCGTCGTTCTCACTCGTGTTCTTGGTTTGCTTCTCCGACCGCTCAGACAGCCTCGAGTCATTGCTGAGATTGTCGGGGGAATATTGCTTGGGCCATCAGCGGTGGGTCGGAGCCAGGAATTTCTGCACAGAATATTCCCAGCAAGAAGCCTCACAGTTTTGGACACATTGGCCAATCTGGGTCTTCTCTTCTTCTTATTTCTAGTGGGCCTTGAGCTAGACCCGAAATCCCTCCGCCAGACCGGCAAGGGCGCCATGGGCATAGCCGTCGCCGGAATCACCCTCCCTTTCGTCCTCGGCATCGGCACCTCCTACGTCCTCCGCTCCACCATCTCCAAAGGCGTCAACGGCCCTCCCTTCCTCGTCTTCATGGGTGTCGCTCTCTCCATCACCGCCTTCCCTGTTCTTGCCCGTATCCTCGCCGAGCTCAAGCTCTTGACCACCAACGTCGGCCGCATGGCCATGTCCGCCGCCGCCGTCAACGACGTCGCCGCCTGGATCCTCCTCGCCCTCGCCATCGCCCTCTCCGGCACCGGCCGCTCCCCTCTCGTCTCCCTTTGGGTCTTCCTCTGCGGCTCTGCTTTTGTCCTCTCCTGCTTCTTCACTCTGCCGCCGCTCTTCCGCTGGATGTCCCGCCGTTGCTCCGAGGGCGAGCCCGTGAGCGAACTCTACATCTGCGCCACTCTATCCATCGTCCTCGCCGCCGGATTCTTCACCGATTTAATCGGAATCCACGCCCTGTTCGGCGCTTTCGTCGTCGGCGTCCTCGTCCCGAAGGACGGCCCACTCGCCGGAGCCCTCGTCGAGAAAGTCGAAGACCTCGTCTCCGGCTTATTCCTTCCTCTGTATTTCGTTTCGAGCGGATTGAAAACCAACATCGCCACAATCAAAGGAGCCCAGTCGTGGGGTCTCCTCGTTCTCGTCGTCGTCACCGCCTGTTTCGGGAAAATCGTCGGCACCATCGCAGTCGCACTCCTCTGCAAGATGCCATTCCAAGAATCCCTCGCTCTGGGATTCCTGATGAACACCAAAGGCCTCGTCGAACTGATCGTCCTCAACATCGGAAAAGACAGAAAAGTCTTGAACGATCAGACCTTTGCGATTCTCGTTCTAATGGCGATCATCACGACCTTCATCACCACGCCGATCGTGATGGCGGTCTACAAGCCGGCAAAGAGAAAGAGCAAATCTGAATACACGTATAGGACGATCGAGCGAGACGACCCCAGTTCCGAGCTGCGGATTTTGGCTTGTTTTCACTCGGTTAACAACATCCCTTCGATTTTGAATCTGATTGAGGTGTCCCGTGGGACGGAAGGCCGCAGTCGGCGGCTCTGTGTGTATGCGATGCATTTGATGGAGCTGACGGAGAGGTCGTCGGCGATTGCTATGGTCCACCGAGCCAGAAAGAATGGGCTGCCGTTTTGGAATAAAGGAGGGAGGTCGGATTCCGATCAAATTGTTGTCGCTTTTGAAGCTTTCCGGCAGCTTAGTCGGGTGTCTGTACGGCCGATGACGGCTATATCGGCGTTCTCTGACATGCACGAAGATGTCTGCAACAGTGCAGAGAGGAAACGGGCGGCCATTATCATCCTCCCATTCCACAAACACCAAAGGTTTGATGGATCTTTAGAGACAACACGAGCGGATTTCCAATGGATGAATCAAAAAGTTCTGGAACAACCACCTTGCTCCGTCGGGATCTTGGTCGATCGAGGATTCGGAGGTGGGTCTCACGTCTGCGCTAGCAACGTCTCTTCCACCATAACCGTCTTCTTCTTCGGTGGTCGCGACGATCGCGAAGCTCTAGCCTATGGTCGAAGAATGGTAGAGCATCCTGGAATAGCCCTAAACGTCATTCGTTTCCTCCTGAGCCCCAATGTGGCCGTCGTCGAATCCATTGCCATCGACATGAACAAAGACGACAGTAAGAATTCAACGGCCATGGACGACGAGAGGGCGTTGACGGAGTTCAACACGAAGAAAACAAACGACGAGTCGGTCAGGTACGAAGAGAGGGTCGTGAGCAAATTTAGCGACGCCATTGAAGTAATGAGGGAGTTCAGTAGATGCAATTTGATATTGGTGGGTCAGGCGCCGGAGGGGAAAGTAATGGAGAGTTTTCATTTGAAGAGTGTTGAATGTTCTTCGGAGTTGGGTCCAATCGGCAGCCTGTTGACATCGTCGGAGCTCTCGACGTCGGCTTCGGTGTTGGTCGTGCAACAGTTTCGTGGTCCGTCGTTGTCTGCTTCCTCCACATCCACAGCCATGGTATTGCCGGAAGAAGTTAAGTGA 2424 55.4 MAAGNATAAGSCPAAMKATSNGVFQGDNPLDFALPLAILQICLVVVLTRVLGLLLRPLRQPRVIAEIVGGILLGPSAVGRSQEFLHRIFPARSLTVLDTLANLGLLFFLFLVGLELDPKSLRQTGKGAMGIAVAGITLPFVLGIGTSYVLRSTISKGVNGPPFLVFMGVALSITAFPVLARILAELKLLTTNVGRMAMSAAAVNDVAAWILLALAIALSGTGRSPLVSLWVFLCGSAFVLSCFFTLPPLFRWMSRRCSEGEPVSELYICATLSIVLAAGFFTDLIGIHALFGAFVVGVLVPKDGPLAGALVEKVEDLVSGLFLPLYFVSSGLKTNIATIKGAQSWGLLVLVVVTACFGKIVGTIAVALLCKMPFQESLALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAIITTFITTPIVMAVYKPAKRKSKSEYTYRTIERDDPSSELRILACFHSVNNIPSILNLIEVSRGTEGRSRRLCVYAMHLMELTERSSAIAMVHRARKNGLPFWNKGGRSDSDQIVVAFEAFRQLSRVSVRPMTAISAFSDMHEDVCNSAERKRAAIIILPFHKHQRFDGSLETTRADFQWMNQKVLEQPPCSVGILVDRGFGGGSHVCASNVSSTITVFFFGGRDDREALAYGRRMVEHPGIALNVIRFLLSPNVAVVESIAIDMNKDDSKNSTAMDDERALTEFNTKKTNDESVRYEERVVSKFSDAIEVMREFSRCNLILVGQAPEGKVMESFHLKSVECSSELGPIGSLLTSSELSTSASVLVVQQFRGPSLSASSTSTAMVLPEEVK 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8361677 8367134 + Maker00029707 Lcy6g0832 635276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0832 807 FunFam Cation/H(+) antiporter 15 36 438 - -
Lcy6g0832 807 Gene3D - 36 441 IPR038770 -
Lcy6g0832 807 PANTHER CATION/H + ANTIPORTER 12 787 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lcy6g0832 807 Pfam Sodium/hydrogen exchanger family 47 427 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0444 Lcy-Chr10:10304632 Lcy6g0832 Lcy-Chr6:8361677 1.59E-111 dispersed
Lcy4g1935 Lcy-Chr4:45674099 Lcy6g0832 Lcy-Chr6:8361677 4.85E-21 dispersed
Lcy6g0227 Lcy-Chr6:2049188 Lcy6g0832 Lcy-Chr6:8361677 1.77E-09 dispersed
Lcy6g0832 Lcy-Chr6:8361677 Lcy6g0834 Lcy-Chr6:8396298 0 dispersed
Lcy6g0832 Lcy-Chr6:8361677 Lcy6g0833 Lcy-Chr6:8378773 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0832 K26731 - csv:101203169 1306.58