Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0833 ATGGCTACGAATGCCACGAATGCGACGGCGGCCGGTGCATGTCCGGCGGCGATGAAGGCCACTTCCAACGGCGTTTTTCAGGGCGACAATCCTCTGAATTTCGCCCTTCCTCTCGCCATCCTTCAGATTTGTCTCGTCGTCCTCCTCACTCGCGTTCTCTCTTTTCTTCTTCGTCCCATTCGACAGCCACGTGTTATTGCTGAGATCGTCGGCGGAATCTTGCTGGGTCCCTCGGCGCTTGGCCGGAACGTGGGGTACTTACACACAATTTTTCCGACGAGGAGCCTCACCGTTTTGGATACGTTGGCCAATTTGGGTCTTCTCTTCTTCCTGTTTCTCGTCGGCTTGGAGTTGGACCCCAAAGCCCTCCGCCGCACCGGAAAACGAGCGATGAGCATCGCCTGCGCCGGAATCACTCTCCCGTTCCTTCTCGGCATCGGCACCTCATTCGTCCTCCGAGCAACCATCTCCAAAGGCGTCAATGAAGGCGCCTTCCTCGTCTTCATGGGCGTCGCTCTTTCCATCACTGCATTCCCTGTTTTGGCTCGAATTCTGGCCGAGCTCAAGCTTTTGACCACCGACGTCGGCCGGATGGCCATGTCCGCCGCTGCAGTCAACGACGTGGCGGCGTGGATTCTTCTGGCTTTGGCAATTGCACTCTCGGGCACCGGTAATTCCCCTCTGGTTTCCCTCTGGGTTTTCCTGTCCGGCGCTGGTTTTGTCCTGCTCTGTATCTTCGGTTTTCCGCCGTTGTTCCATTGGATGTCGCAACGGTGCTCCGAGGGAGAGCCGGTGAAGGAATTGTACATTTGTGCCACTCTATCGCTCGTTTTGGCTGCTGGGTTCATCACGGATTTGATTGGAATCCACGCTCTGTTCGGAGCTTTCGTCGTCGGAGTTTTGGTTCCTAAAGAAGGCCCATTTGCCGGAGCTCTGGTTGAGAAAGTTGAGGATCTCGTCTCTGGTCTTTTTCTTCCGTTATACTTCGTTTCAAGTGGATTGAAAACGAACGTTGCAACAATTCAAGGAGCTCAATCATGGGGTCTTCTCGTTCTGGTCATCGTCACAGCCTGTGTTGGTAAAATCGTCGGAACTGTATCCGTTTCCCTGCTCTGCAAAATGACATTCGAAGAATCAATCGCTTTGGGGTTCTTGATGAACACGAAAGGCTTGGTCGAATTGATCGTTCTAAACATCGGCAAAGACAGAAAGGTTTTGAATGATCAAACATTCGCCATTATGGTTCTAATGGCAATCTTCACAACGTTCATCACAACTCCGATTGTGATAGCGGTTTACAAGCCGGCGAAAAGACAGAGCAAATCCGATTACAAGGATAGAACTATCCAGAGGGAAAATCCCAATTCCCAGCTCCGAATTCTGGCCTGTTTCCACTCCATCGACAACATTCCGGCGACGCTTAACCTCATCGAGGCCTCTCGAGGGATAGAAAAGAAAGAAGGGCTCTGTGTTTATGCTCTGCATCTAATGGAGCTAACAGAGAGATCCTCCGCCATTCTTATGGTTCACAAAGCAAGGAAAAACGGGGTCCCCTTTTGGAACAAAGGCCGATCCAATTCGAACCAGATCGTCGTCGCCTTCGAAGCATTCCGGCAACTCAGCCGGGTCTCAATCCGGCCGATGACCGCCATTTCTGCTCTGACCAATATGCACGAAGATATCTGCAGCAGCGCCGAGAGCAAAAAAGCCGCCATTATAATCCTCCCATTTCACAAACACCAAAGATTGGACGGATCTCTTGAGACCACGAGGACTGATTACCGGTGGGTCAACCGGAGAGTTCTGGAACAATCGCCTTGCTCCGTCGGAATCTTGATCGACAGAGGACTCGGCGGTGGGTCCCACGTGACCGCCAGTGATGTCGACTCCACCATCACCGTCTTCTTCTTCGGAGGGCATGACGACCGTGAGGCTCTGGCGTTCGGGAAAAGAATGGCGGAGCATCCCGGAATCAGCCTGCAGGTTGTCCGATTCACCCCCGCCACCGATTTCGCTGCGGAATCCGTCGCCGTCGACATAACCAACACCGATCCCGCCGACTCTACCGATTCCGGCGCCGATGACCGGGCGTTGGCTTCGATTGTGTATGAAGAGAGGAACGTGAGCAAAGGGAGCCACGCCATTGAAGCGATGAAGGAGTTCAGTAAATGCAATTTGATTCTGGTCGGAAGAATGCCGGAGGGGGAAGTTGTGAGGAGTTTGGGCGTGAGCAATCTGGAGTGTTCGGAGCTTGGGCCTGTCGGCGGGGTGTTGGCGTCGCAGGAGTTTTCGACGACGGCGTCGGTGCTGGTGGTGCAGCAGTTTCGCGGTCAGATACCGGTGCAGATGGACATGGATTCTACTTACAAAGGGGAGTCGACGACTGAGGACGACCGTTAA 2400 53.5 MATNATNATAAGACPAAMKATSNGVFQGDNPLNFALPLAILQICLVVLLTRVLSFLLRPIRQPRVIAEIVGGILLGPSALGRNVGYLHTIFPTRSLTVLDTLANLGLLFFLFLVGLELDPKALRRTGKRAMSIACAGITLPFLLGIGTSFVLRATISKGVNEGAFLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGTGNSPLVSLWVFLSGAGFVLLCIFGFPPLFHWMSQRCSEGEPVKELYICATLSLVLAAGFITDLIGIHALFGAFVVGVLVPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIVTACVGKIVGTVSVSLLCKMTFEESIALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFITTPIVIAVYKPAKRQSKSDYKDRTIQRENPNSQLRILACFHSIDNIPATLNLIEASRGIEKKEGLCVYALHLMELTERSSAILMVHKARKNGVPFWNKGRSNSNQIVVAFEAFRQLSRVSIRPMTAISALTNMHEDICSSAESKKAAIIILPFHKHQRLDGSLETTRTDYRWVNRRVLEQSPCSVGILIDRGLGGGSHVTASDVDSTITVFFFGGHDDREALAFGKRMAEHPGISLQVVRFTPATDFAAESVAVDITNTDPADSTDSGADDRALASIVYEERNVSKGSHAIEAMKEFSKCNLILVGRMPEGEVVRSLGVSNLECSELGPVGGVLASQEFSTTASVLVVQQFRGQIPVQMDMDSTYKGESTTEDDR 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8378773 8382306 + Maker00029885 Lcy6g0833 635277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0833 799 Gene3D - 38 443 IPR038770 -
Lcy6g0833 799 PANTHER CATION/H + ANTIPORTER 14 778 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lcy6g0833 799 Pfam Sodium/hydrogen exchanger family 48 428 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy6g0833 799 FunFam Cation/H(+) antiporter 15 38 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1455 Lcy-Chr1:14144593 Lcy6g0833 Lcy-Chr6:8378773 2.15E-254 dispersed
Lcy3g1897 Lcy-Chr3:46223657 Lcy6g0833 Lcy-Chr6:8378773 6.20E-98 dispersed
Lcy6g0833 Lcy-Chr6:8378773 Lcy8g0168 Lcy-Chr8:3957644 9.32E-249 dispersed
Lcy6g0832 Lcy-Chr6:8361677 Lcy6g0833 Lcy-Chr6:8378773 0 tandem
Lcy6g0833 Lcy-Chr6:8378773 Lcy6g0834 Lcy-Chr6:8396298 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0833 K26731 - csv:101202937 1267.68