Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0834 ATGGCTTCGAATACTACAGCAGTGACCAAATGTCCATCTCCAATGAAAGCAACATCAAACGGCATTTTCCAGGGCGATAATCCTCTTGATTTTGCCCTCCCTCTTGTCATTCTGCAAATATGTTTGGTAGTCGTACTTACTCGTGGTCTTGCTTTTCTTCTGAGGCCGTTAAAACAACCACGAGTGATTGGAGAAATTATTGGAGGAATACTTCTTGGTCCATCAGCTCTTGGACGTAACAAGAACTTTCTTCATACGATATTTCCATCGAATAGTATCACGTTGTTAGATACTATAGCAAATATTGGATTGTTATTCTTTCTCTTTCTTGTGGGCCTTGAGTTAGATCTAAAGTCAATACGTCGTACTGGAAAGAAGGCCCTTGGAATTGCCATTACTGGAATTGGCCTTCCCTTTGCTCTAGGAATTGGATCGTCATTTGTCCTCCGAGGAACCATATCCAAAGGTGTAAATGCTTCAGCGTTTCTCATATTCATGGGAGTTGCACTTTCGATAACAGCATTTCCCGTCTTAGCTCGTATCCTTGCCGAGCTTAAGCTTCTAACCACTGATGTTGGCAGAATGGCTATGTCTGCTGCAGCAGTGAACGACGTAGCTGCCTGGATTCTCCTTGCTCTTGCCATTGCATTATCTGGTTCGGATAAATCTCCCCTAACTGCAGTTTGGGTCCTTTTATCTGGCTGTGCCTTTGTTGTTGCCGCTATTGTCATTTTATCCCCAGTTTTCAAATGGATGTCCAAACAATGTTTTCAAGGGGAGCCGGTACGTGAGATCTACATATGCGCTACATTAGCTATTGTCCTAGCTGCTGGATTTGCCACAGATTTTATTGGGATACATGCTATGTTTGGAGCTTTTGTTGTTGGAGTGTTAGTCCCGAAGGATGGACCATTAGTAGGTGCTTTGGTAGAGAAAATAGAGGATCTTGTTTCTGGTCTATTCCTGCCTCTTTATTTTGTCTCAAGTGGTTTGAAGACTAATGTAGCCACAATTCAAGGGGCACAGTCCTGGGGTCTTCTAGTTTTAGTTATAGTTACGGCCTGTTTCGGAAAAATCTTTGGCACTTTTCTCGTGTCCATTCTTTGTAAAGTACCTGTTCGTGAGGCTCTCGCGTTAGGATTTCTAATGAACACAAAGGGTTTGGTGGAGCTTATTGTTCTCAATATTGGAAAAGACAGAAAGGTTTTGAATGACCAGACCTTTGCAATAATGATTCTAATGGCTCTTTTTACTACTTTCATTACCACTCCCCTTGTCATTGCCGTATACAAGCCGGCTAGGAATGCCAAACTAGCCGATTATAAGCATAGGAAAATCGAACGAAAAAACAGGAATACACAGCTGAGGATTTTGACCTGTTTCCATAGTGCAGGAAACATTCCATCAATTATAAATCTGCTCGAGGCCTCGAGAGGAATTGAGAAGGACGAAGAACTTTGTGTATATGCAATGCATCTCATGGAGCTATCCGAGAGGTCCTCAGCCATTTTAATGGTACATAAGGCCAGGAAAAACGGTTTGCCCTTCTGGAATAAGGGCCTGAGGTCGAATTCCAACCATGTTATCGTCGCATTTGAAGCCTACCAACAACTGAGCAGAGTATTCATCAGACCGATGACAGCCATCTCCTCCATGTCTGACATACATGAAGATATCTGCGCTACTGCTGAGAGGAAAAGAACTGCAATCATAATTCTTCCATTCCACAAGCACTTGAGGGTGGATGGTTCACTGGAGACTACTCGAAGCAGCATCCGCGTAGTTAATCAGAACGTTCTCGAGCATGCTCCATGTTCGGTTGGAATTTTCATCGATCGTGGGTTGGGTGGAACGACCCATGTTTCGTCGAGCAATGTTAAGCTTTTCATCACTGTTCTATTCTTTGGTGGTGGAGATGATCGCGAAGCGCTTTCTTATGGTGTTCGCATGGCCGAGCACCCTGGCATTAGATTGATGGTAGTTCGTTTCTTCGTTGAACCCGAGCCTGTTGGGGAGATAGTCAGTGCTGATACTGTTGGGAATTCTTCTGCGATATCACTTTCTCAGGACGATGAATTTCTTTCTGAATTCAAGGACAGTGTGGACAAGAACGATTCCATCATATATGTAGAGAAAACCATAAAAAGTGCTGCAGAAGCAATGGATACAGTGCAGGAACTGAAAAGCTGCAATCTGTATCTCGTTGGCCGAACACCGGATATCAAAGCAACCTTTGACTTGAACAGAAGTGACTGCCCGGAGCTCGGTCCAGTCGGGAACCTGTTGACTTCACCAAACTTCCCGATTGCAGCATCAGTTTTGGTGGTGCAGCAATATCGTTCTGAGTTACCGATCAACTCGGCTTTAGATTCTGCTGAAGGAGAATCAGAATCAGCATAG 2400 43.88 MASNTTAVTKCPSPMKATSNGIFQGDNPLDFALPLVILQICLVVVLTRGLAFLLRPLKQPRVIGEIIGGILLGPSALGRNKNFLHTIFPSNSITLLDTIANIGLLFFLFLVGLELDLKSIRRTGKKALGIAITGIGLPFALGIGSSFVLRGTISKGVNASAFLIFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSDKSPLTAVWVLLSGCAFVVAAIVILSPVFKWMSKQCFQGEPVREIYICATLAIVLAAGFATDFIGIHAMFGAFVVGVLVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIVTACFGKIFGTFLVSILCKVPVREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMILMALFTTFITTPLVIAVYKPARNAKLADYKHRKIERKNRNTQLRILTCFHSAGNIPSIINLLEASRGIEKDEELCVYAMHLMELSERSSAILMVHKARKNGLPFWNKGLRSNSNHVIVAFEAYQQLSRVFIRPMTAISSMSDIHEDICATAERKRTAIIILPFHKHLRVDGSLETTRSSIRVVNQNVLEHAPCSVGIFIDRGLGGTTHVSSSNVKLFITVLFFGGGDDREALSYGVRMAEHPGIRLMVVRFFVEPEPVGEIVSADTVGNSSAISLSQDDEFLSEFKDSVDKNDSIIYVEKTIKSAAEAMDTVQELKSCNLYLVGRTPDIKATFDLNRSDCPELGPVGNLLTSPNFPIAASVLVVQQYRSELPINSALDSAEGESESA 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8396298 8401284 + Maker00029933 Lcy6g0834 635278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0834 799 Gene3D - 35 438 IPR038770 -
Lcy6g0834 799 FunFam Cation/H(+) antiporter 15 35 437 - -
Lcy6g0834 799 PANTHER CATION/H + ANTIPORTER 11 785 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lcy6g0834 799 Pfam Sodium/hydrogen exchanger family 47 425 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0832 Lcy-Chr6:8361677 Lcy6g0834 Lcy-Chr6:8396298 0 dispersed
Lcy6g0834 Lcy-Chr6:8396298 Lcy8g0168 Lcy-Chr8:3957644 8.94E-252 dispersed
Lcy6g0833 Lcy-Chr6:8378773 Lcy6g0834 Lcy-Chr6:8396298 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0834 K26731 - csv:101223205 1389.4