Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0849 ATGTATGGTCAGCCTCGGCAAGAGGCCGAGGCCGACCATCCGGCCCGCGCGGACTTGGACACCCCCCTTTCGGTCCCAGATGCCCCGAATCGCCCCGGTTTTGCCCGGTTCGTCCTGAAACACCTCCGAATTCCTAAAAATCCTAGAAGGACGAGCAGGTATTTAAACCCCTCTTCATCATTGAAGAAGGGTTCCGAAAACTCTATTCTCAACTTCTTCCTTTACTCCCTATCTTCTCCTCGGTTTTCTGACTTAAGCATCGGAGGCGGTGTGGCCTACACCACACCGGTGTGCAGCGGTTTTGGCTGGTCTTGCAGGTCACGTCTTCCCCATTTTGGTAAAACCCTAGTAATAATGGATGGTGACATTAACAATAATAATCCACATATGGCAAATAGTTGCAGTAGTAGTAGTTCATTGATGATGATGATGAACTGCAGTACTGATCAGGTTATTGATGGATCAGGATGTTGTGAAATTGATTGGGCTGGGCTTCTTTCTGGTTCTTGTTTGAGCTTGGAGATGGAGAAGAAGGAAAGTGGAAGTGGGGCTGCAATGGAAACTCATGAGGATTATCATGGAGGGAAGAAGATCAGCAATAAAGGAAAAATGGTGATGGGATCAAAGAGAAGTGCTGCAATGCCAAGGGTTGCTTTTCAGACAAGGAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAGTATGGTCAGAAGGCTGTCAAACATAGCACACATCCTAGGAGCTATTACCGATGTACACATCATACATGCAACGTTAAGAAACAAATTCAAAGGCACTCCAAGGATCCAACCATAGTGGTGACAACATATGAAGGAATTCACAACCATCCATCTGAAAAATTAATGGAGACTCTAAGCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGAATTTAG 924 45.89 MYGQPRQEAEADHPARADLDTPLSVPDAPNRPGFARFVLKHLRIPKNPRRTSRYLNPSSSLKKGSENSILNFFLYSLSSPRFSDLSIGGGVAYTTPVCSGFGWSCRSRLPHFGKTLVIMDGDINNNNPHMANSCSSSSSLMMMMNCSTDQVIDGSGCCEIDWAGLLSGSCLSLEMEKKESGSGAAMETHEDYHGGKKISNKGKMVMGSKRSAAMPRVAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8565978 8568589 - Maker00030097 Lcy6g0849 635293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0849 307 SUPERFAMILY WRKY DNA-binding domain 221 287 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0849 307 MobiDBLite consensus disorder prediction 181 198 - -
Lcy6g0849 307 ProSiteProfiles WRKY domain profile. 223 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0849 307 Gene3D WRKY domain 212 287 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0849 307 FunFam WRKY transcription factor 57 214 288 - -
Lcy6g0849 307 SMART WRKY_cls 228 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0849 307 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 189 286 IPR044810 GO:0003700(InterPro)
Lcy6g0849 307 MobiDBLite consensus disorder prediction 181 201 - -
Lcy6g0849 307 MobiDBLite consensus disorder prediction 1 28 - -
Lcy6g0849 307 Pfam WRKY DNA -binding domain 229 286 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2292 Lcy-Chr10:46551930 Lcy6g0849 Lcy-Chr6:8565978 2.08E-34 dispersed
Lcy6g0849 Lcy-Chr6:8565978 Lcy9g0278 Lcy-Chr9:7090157 3.39E-40 dispersed
Lcy9g2076 Lcy-Chr9:45518531 Lcy6g0849 Lcy-Chr6:8565978 2.14E-14 dispersed
Lcy6g0849 Lcy-Chr6:8565978 Lcy6g0850 Lcy-Chr6:8578878 4.86E-15 tandem
Lcy11g2004 Lcy-Chr11:43664404 Lcy6g0849 Lcy-Chr6:8565978 8.06E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20274 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0849 - - - 0.0