Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0869 ATGGTGAACAGCGAAGCTCCTTTGATCGTTTCTGTTATGAGATTTTATGTTTTGTTTTCAATGTTTGCTTACAAATCCATGGCAGAAGAAGCAGACCAAAACCGCAAGGTTCACATCGTTTACCTTGGAGAAAGGCAATACGATGATATTAATTTAACAACTGAGTCTCACCATAATTTACTGGCCAAAGTATTGGGAAGTTATAGACATGGCTTTTCTGGGTTTGCAGCCAAGCTCACCAAGTCTCAGGCTCAAAAGCTAGTCGGTGTCATTGATACAGGATTTTGGCCGGAGTCCGCGTCTTTTGCAGACAAAGGAATGGGACCAGTACCATCACGATGGAAAGGCAAATGCAAATCAGGAGAATTGTTCAATTCCACAAACTGCAACAAGAAAGTCATAGGAGCACGCTGGTTCGTGAAGGGCTTCATCGCCGATTATGGGCGGGAGGCACTAGCCAACGAATGCTTATCCCCACGAGACACCCATGGACACGGAACCCACACAGCCAGCACAGCTGCAGGTTCATTTGTAACAAATGTTAGCTACCACGGCCTTGGTGCCGGTACGTTGAGGGGCGGTGCGCCACTCGCACGGTTGGCCATATACAAGGTAGGGTGGACCGGTGGTGGCGGGTCGATGGCGGACATATTGAAGGGCATAGATGTGGCCATTCACGACGGTGTGGATGTGCTGTCTATATCGATGGGGCTGCCACTTCCTTTGGTTCCAGAGTTGGACCAAGCAAATGGAATTGGCATTGGGTCATTTCATGCTATTGCGAGGGGGATTCCTGTTGTGTGTTCGGGTGGCAATGAAGGCCCTTATGAGCAGACGGTGGGAAACACTGCGCCTTGGATTTTGACTGTGGCTGCCTCTACAATGGATAGAGCCTTTCTTTCATCAATTACTCTTCTTGAAGATAATACCACTTATTTGGGCCAAAGCTTCTTCTATTCCAAAAAGGATCTTGTTGCTGAGTTGACCGTTCCGCCAGATAGAAGATGTGATCGCATTTCGGGAAATGAGAATTTTAGTGGGAAAGTTGTTCTCTGCTTCTCTGATAAAGTTAATCTGTCGGCGGCAACGGCGGTGAAAAAAGCAAATGGGAGTGGGATAATTGTCGCCGGCGAAAACATCGATATATTGTATGAGTTTGGCGAATCCTTTCCATGCGTCGTAGTGGATACCGATGTTGGCACAAAATTGTTCTTTCAAGCTTTAGACGACAGTAATCCAATGGTAAGGTTGAGGCATGCAAAAACCATCATCGGCAAGCCCATATCAACCAGGATTGCCCATTTCTCATCTAGAGGTCCAAATTCTGCTTCACCTGCAATTCTCAAGCCAGACATAGCCTCTCCTGGATCCAACATTCTAGCTGCCGTTCCTCCTGACTTTAGTTCAAACGACGAAGGGTTTGGCATGATGTCAGGAACTTCCATGGCTGCACCTCATGTCTCTGGCATCGTAGCTCTTCTTAAATCCCTACATCCTACTTGGTCACCTGCCGCCATTAAATCAGCCATCATCACCACGGCACGTGTAAAGAACCCCTCAGGATTGCCCATTTTTGCCAGCGGCAGTCCTCCCAAAGTCGCCGACCCATTTGACTACGGTGGTGGAGTGGTGGATCCCAACGCCGCCGCCGACCCAGGTCTGATCTACGATCTGGGCACCAGTGATTACATATATTATTACCTCTGCGCCATGGGTTATAAGGTTTCAGACATCTCTCACCTAACCAAGAAAAAAACAGAGTGTTCCTTGCAGAGACCTTCGATGTTGGACTTGAACCTGCCGACCATTACAGTCCCTGAACTCACAAACTCCACCACCGTGACTCGAACTGTGACCAATGTAGGGAACTTGACCTCCATTTATAGGGCAGTGGTCGAGCCTCCCCCTAGCACCAAGGTCAGTGTGGAGCCCCAGGTGTTGGCCTTCAACTCCAAAGTGAAAAAGATTTCCTTTAAGGTTACGATCTCCACCACCCTGTCTACGAACTACGGGTACTCTTTTGGAACCTTGACATGGACTGATGGAGTGCATCTTGTTAAAAGTCCCTTGTCTGTGCGAATTGATTTCCTTTGA 2094 48.04 MVNSEAPLIVSVMRFYVLFSMFAYKSMAEEADQNRKVHIVYLGERQYDDINLTTESHHNLLAKVLGSYRHGFSGFAAKLTKSQAQKLVGVIDTGFWPESASFADKGMGPVPSRWKGKCKSGELFNSTNCNKKVIGARWFVKGFIADYGREALANECLSPRDTHGHGTHTASTAAGSFVTNVSYHGLGAGTLRGGAPLARLAIYKVGWTGGGGSMADILKGIDVAIHDGVDVLSISMGLPLPLVPELDQANGIGIGSFHAIARGIPVVCSGGNEGPYEQTVGNTAPWILTVAASTMDRAFLSSITLLEDNTTYLGQSFFYSKKDLVAELTVPPDRRCDRISGNENFSGKVVLCFSDKVNLSAATAVKKANGSGIIVAGENIDILYEFGESFPCVVVDTDVGTKLFFQALDDSNPMVRLRHAKTIIGKPISTRIAHFSSRGPNSASPAILKPDIASPGSNILAAVPPDFSSNDEGFGMMSGTSMAAPHVSGIVALLKSLHPTWSPAAIKSAIITTARVKNPSGLPIFASGSPPKVADPFDYGGGVVDPNAAADPGLIYDLGTSDYIYYYLCAMGYKVSDISHLTKKKTECSLQRPSMLDLNLPTITVPELTNSTTVTRTVTNVGNLTSIYRAVVEPPPSTKVSVEPQVLAFNSKVKKISFKVTISTTLSTNYGYSFGTLTWTDGVHLVKSPLSVRIDFL 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8786657 8795553 + Maker00030021 Lcy6g0869 635313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0869 697 FunFam Subtilisin-like protease SBT1.5 85 306 - -
Lcy6g0869 697 Pfam Subtilase family 87 517 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g0869 697 PRINTS Subtilisin serine protease family (S8) signature 83 102 IPR015500 -
Lcy6g0869 697 PRINTS Subtilisin serine protease family (S8) signature 478 494 IPR015500 -
Lcy6g0869 697 PRINTS Subtilisin serine protease family (S8) signature 161 174 IPR015500 -
Lcy6g0869 697 FunFam Subtilisin-like protease SBT1.5 568 695 - -
Lcy6g0869 697 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 89 IPR037045 -
Lcy6g0869 697 Gene3D Peptidase S8/S53 domain 90 563 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0869 697 CDD PA_subtilisin_like 306 417 - -
Lcy6g0869 697 ProSitePatterns Serine proteases, subtilase family, serine active site. 479 489 IPR023828 -
Lcy6g0869 697 Pfam Fibronectin type-III domain 597 692 IPR041469 -
Lcy6g0869 697 SUPERFAMILY Subtilisin-like 87 554 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0869 697 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 87 689 IPR045051 -
Lcy6g0869 697 Pfam Peptidase inhibitor I9 38 87 IPR010259 -
Lcy6g0869 697 CDD Peptidases_S8_3 88 514 IPR034197 -
Lcy6g0869 697 Gene3D - 568 694 - -
Lcy6g0869 697 Gene3D - 296 424 - -
Lcy6g0869 697 ProSiteProfiles Serine proteases, subtilase domain profile. 58 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0869 Lcy-Chr6:8786657 Lcy6g0877 Lcy-Chr6:8918815 0 dispersed
Lcy6g0869 Lcy-Chr6:8786657 Lcy6g0871 Lcy-Chr6:8811593 0 proximal
Lcy12g0050 Lcy-Chr12:748850 Lcy6g0869 Lcy-Chr6:8786657 2.36E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0869 - - - 0.0