Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0871 ATGGTGAACAGCGAAGCTCCTTTGATCGTTTCTGTTATGAGATTTTATGTTTTGTTTTCAATGTTTGCTTACAAATCCATGGCAGAAGAAGCAGACCAAAACCGCAAGGTTCACATCGTTTACCTTGGAGAAAGGCAATACGATGATACTAAATTGACAACTAAGTCTCACCATGATTTACTCGCCACTGTATTGGGAAGTTACAGACATGGTTTTTCTGGGTTTGCAGCCAAGCTCACCAAGTCTCAAGCTCAAAAGCTAGCCGAAATACCAGGGGTGATTCGAGTTTTTCCAAGTTCACTTTACAAATTGCATACTACAAGAAGTTGGGATTTTCTCGGCCTCTCCTCTTCTCCCTTTGAGTCATCCAACCTTCTTCATCGTGCTAAAATGGGCGACAATGTCATCATAGGTGTCATTGATTCAGGATTCTGGCCGGAGTCCGCGTCTTTTGGGGACAAAGGATTGGGACCAGTACCATCACGATGGAAAGGCAGATGCAAATCAGGAAAATTTTTCAATTCCACAAACTGCAACAGGAAAGTCATAGGAGCGCGTTGGTTCGTGAAGGGCCTCATCGCGGAGCATGGGCGGGAGGCACTAGCCAACGATTGGTTATCCCCACGAGACACCAATGGACACGGAACCCACACAGCCAGCACAGCCACAGGTTCATTTGTAACAAATGTTAGCTACCATGGCCTTGGTGCCGGTACGCTGAGGGGTGGTGCGCCACTCGCACGGTTGGCCATATACAAGGTCGCGTGGTCCGGTGGCGGGTCGGAGGCGGACTTTTTGAAGGGCATAGATATGGCCATTCACGACGGTGTGGATGTGCTATCTATATCGCTTGGGGGGCTAATTCCTTTGCTTCCAGAGTTCAACCAAGAAAATGGAATTGGCATTGGGTCATTTCATGCTATTGCGAGGGGGATTTCTGTTGTGTGTGCGGGTGGCAATGAAGGCCCTTATGAGCAGACGGTGGGAAACACTGCGCCTTGGATTTTGACTGTGGCTGCCTCTACAATGGATAGAGCCTTTCTTTCATCAATTACTCTTCTTGGAGATAATACCACTTATTTGGGCCAAAGCTTCTTCTATTCCGAAAAGGATCTTGTTGCTGAGTTGGAGTTTCCGCGAACTGCAAGACTTTTCAGTTTACTTCGATGTGATGGCATTTCGGGAAATGAGAATTTTAGTGGGAAAGTTGTTCTCTGCTTCTCGGATAAAGTTAATATGACGGCGGCCACGGCGGTGATGAAAGCAAATGGGAGTGGGATAATTGTCGCCGGCGAAAACATCGATATATTGATTGAGTATGGCGAATCCTTTCCATGTGTCGCAGTGGATACCGACGTTGGCACAAAATTGTTCTTTCACACTTTAGACGGCAGCAATTCAATGGTAAGGTTGAGGCGTGCAAAAACCTTCATCGGCCAGCCCATATCAACCACGATTGCCCATTTCTCATCTAGAGGTCCAAATTCTGCTTCACCTGCAATTCTCAAGCCAGACATAGCCGCTCCTGGAGTCAACATTCTAGCTGCCGCTCCACCTCACACTTCCAACTACGAAGGGTTTGACATGATGTCAGGAACTTCCATGGCCACGCCTCATGTTGCTGGCATCGTGGCTCTTCTTAAATCCCTACATCCTACTTGGTCACCTGCGGCCATTAAATCAGCCCTCATCACCACGGCACGTGAAAAGAACCCCTCAGGATTGCCCATTTTTGCCAGCGGCAGTCCTCCCAAAGTCGCCGACCCATTTGACTACGGCGGTGGAGTGGTGGATCCCAACGCCGCCGCCGACCCAGGTCTGATCTACGATATGGGCACCCGTGATTACATATATTATTACCTCTGCGCCATGGGTTATAAGGTTTCAGACATTTCTCACCTAACCAAACAAAAAACAAAGTGCCCCTTGCAGAGACATTCAGTGTTGGACTTGAACCTGCCGACCATTACAGTGCCTGAACTCACAAACTCCACCACTGTGTCTCGAACTGTGACCAATGTAGGGAACATGACCTCCATTTATAGGGCAGTGGTCGAGCCTCCCCCTGGCACCAAGGTCAGGGTTGAGCCCCGTGTGTTGGCCTTCAACTCCAAAGTGAAGAAGATTTCCTTTAAGGTTACGATTTCCACCACCATGTTTATGAACTACGGGTACTCTTTTGGAACCTTAACATGGACTGATGGAGTGCATCTTAGCGGGGGAAGACATGGCCTGCAAAAGAGTAAACCTGCACACCGGTGTGGTGCTAGCCACACCGCCTCCGATGCTTCAGTCAGAAAAGGGAAGAGGAGAGCAAGAGAGTGTTTCGGGACAAACCAGGCGGAACCGGGGTGGCTGGAGGCTGCACGGACCGAACGGAGTCGGTGGGACTCCGCCCGCGCAAGCGGGCCGAGGGTCGGCCTCGGCCTAGGCCGAGCAGGGGGGTCGGGCCAAATGCCCGACCCCTTCGATCTTGACCCGTCCCATTTGCCGGTTTCACCTCTGGGGTCCATCTCTTAG 2520 50.12 MVNSEAPLIVSVMRFYVLFSMFAYKSMAEEADQNRKVHIVYLGERQYDDTKLTTKSHHDLLATVLGSYRHGFSGFAAKLTKSQAQKLAEIPGVIRVFPSSLYKLHTTRSWDFLGLSSSPFESSNLLHRAKMGDNVIIGVIDSGFWPESASFGDKGLGPVPSRWKGRCKSGKFFNSTNCNRKVIGARWFVKGLIAEHGREALANDWLSPRDTNGHGTHTASTATGSFVTNVSYHGLGAGTLRGGAPLARLAIYKVAWSGGGSEADFLKGIDMAIHDGVDVLSISLGGLIPLLPEFNQENGIGIGSFHAIARGISVVCAGGNEGPYEQTVGNTAPWILTVAASTMDRAFLSSITLLGDNTTYLGQSFFYSEKDLVAELEFPRTARLFSLLRCDGISGNENFSGKVVLCFSDKVNMTAATAVMKANGSGIIVAGENIDILIEYGESFPCVAVDTDVGTKLFFHTLDGSNSMVRLRRAKTFIGQPISTTIAHFSSRGPNSASPAILKPDIAAPGVNILAAAPPHTSNYEGFDMMSGTSMATPHVAGIVALLKSLHPTWSPAAIKSALITTAREKNPSGLPIFASGSPPKVADPFDYGGGVVDPNAAADPGLIYDMGTRDYIYYYLCAMGYKVSDISHLTKQKTKCPLQRHSVLDLNLPTITVPELTNSTTVSRTVTNVGNMTSIYRAVVEPPPGTKVRVEPRVLAFNSKVKKISFKVTISTTMFMNYGYSFGTLTWTDGVHLSGGRHGLQKSKPAHRCGASHTASDASVRKGKRRARECFGTNQAEPGWLEAARTERSRWDSARASGPRVGLGLGRAGGSGQMPDPFDLDPSHLPVSPLGSIS 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8811593 8823253 + Maker00029696 Lcy6g0871 635315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0871 839 Gene3D Peptidase S8/S53 domain 134 616 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0871 839 Gene3D - 621 739 - -
Lcy6g0871 839 Pfam Fibronectin type-III domain 650 737 IPR041469 -
Lcy6g0871 839 MobiDBLite consensus disorder prediction 743 769 - -
Lcy6g0871 839 ProSitePatterns Serine proteases, subtilase family, serine active site. 532 542 IPR023828 -
Lcy6g0871 839 SUPERFAMILY Subtilisin-like 15 674 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0871 839 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 105 IPR037045 -
Lcy6g0871 839 Gene3D - 344 478 - -
Lcy6g0871 839 ProSiteProfiles Serine proteases, subtilase domain profile. 109 603 - -
Lcy6g0871 839 CDD Peptidases_S8_3 102 567 IPR034197 -
Lcy6g0871 839 Pfam Subtilase family 132 573 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g0871 839 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 38 734 IPR045051 -
Lcy6g0871 839 FunFam Subtilisin-like protease SBT1.5 134 355 - -
Lcy6g0871 839 MobiDBLite consensus disorder prediction 793 839 - -
Lcy6g0871 839 FunFam Subtilisin-like protease SBT5.3 26 105 - -
Lcy6g0871 839 FunFam Subtilisin-like protease SBT1.5 621 740 - -
Lcy6g0871 839 CDD PA_subtilisin_like 354 471 - -
Lcy6g0871 839 PRINTS Subtilisin serine protease family (S8) signature 132 151 IPR015500 -
Lcy6g0871 839 PRINTS Subtilisin serine protease family (S8) signature 531 547 IPR015500 -
Lcy6g0871 839 PRINTS Subtilisin serine protease family (S8) signature 210 223 IPR015500 -
Lcy6g0871 839 Pfam Peptidase inhibitor I9 38 105 IPR010259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0871 Lcy-Chr6:8811593 Lcy6g0877 Lcy-Chr6:8918815 0 dispersed
Lcy6g0869 Lcy-Chr6:8786657 Lcy6g0871 Lcy-Chr6:8811593 0 proximal
Lcy6g0871 Lcy-Chr6:8811593 Lcy6g0872 Lcy-Chr6:8834594 0 tandem
Lcy4g1338 Lcy-Chr4:31426419 Lcy6g0871 Lcy-Chr6:8811593 1.60E-08 transposed
Lcy4g1855 Lcy-Chr4:44703870 Lcy6g0871 Lcy-Chr6:8811593 2.16E-14 transposed
Lcy12g0049 Lcy-Chr12:741855 Lcy6g0871 Lcy-Chr6:8811593 3.36E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0871 - - - 0.0