Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0875 ATGAAAAACAGGGGATGGTTTCTTGTTCTGTTCTTGTATGCATCAGTCTTCGACGGACTGACTGTAAAACCACAGGCCAGTGGCAAGCTTCTTCACATCGTATATCTCCAAGGGAAGCAGCATGATCCAAAGCCCAGCACCGAGATTCATCACAATTTCCTGGCAACTGTATTGGGAAGTTATACCCATGCCTTTTCTGGGTTTGCGGCCAAGCTCTCAAAATCTCAAGCCCATCAGCTCGCTGAAATGCCTGGTGTGGTTCGAGTTCTTCCAAATGTTCTTTACGAGCTTCATACTACTAGAAGCTGGGATTTCCTCGGCCTTTCTCCTCCTTCATCTCCCTCAAATCTTCTGCAGATCAGTAATTCGGGTGACGGCGTGATCATCGGAGTCGTGGACACAGGAATTTGGCCGGAATCGGAGGCGTTCAACGACGAAGGATTGGGGCCGGTGCCACGGCGGTGGAGAGGCGTGTGCCAATCAGGGGAAGAATTCAATGCGACGAGAGATTGCAACAGAAAAATCATAGGAGCGAAATGGTACGTTGATGGGTTTATAGCGGAATTTGGGGAATTCAACAGATCGGCAGTGAAAGAATTCATGTCGCCAAGAGATCCAAACGGACATGGGACTCAAACGGCCAGCACCGCCGCCGGTTCGTTCGTGAGGAATGTCAGTTACAGAGGCCTCGGCGGCGGGACTGTGAGGGGCGGCGCACCGGCGGCGCGGCTGGCAGTATACAAGGCTTGTTGGAGCTTGCCTGCCGGCGGTGGCCAGTGTGCGGCGGCGGACGTGTTGAAGGGGCTAGACGACGCCGTTCACGACGGCGTTGATGTTCTGTCTCTGTCGTTGGGGAAGAGTGTTCCTCTGTATGCGGAGGTGGATGAAGAGAATGTGGTGGCGATTGGGTCATTTCGGGCAAATTTGAGGAATGTTTCGGTGGTTTGTTCCGCCGGTAACGACGGGCCTTCTGCAGAGACGGTGGTGAACATTTCGCCTTGGATTTTGAGTGTGGCTGCGAGTTCTATGGATAGAAGTTTTTTGGGCTCCATTACTCTGGGAAATAACAACACTTTTCTGGGCCAGACCCTTTTCTCAGGAAAAGAGATTGGATACAGTGGCTTGGTATACCCAGAGCTCGGGTTGGACCCCAACGTTGCAGCTGGGCTATGCGATTCAGTGGCACTAGTGAATGGCAGTGATTGGATGGCTGGAAAAGTAGTGCTGTGCTTCAGCAGAGCAGTGGGGATAATGAATCCAATGGCCATAACAAGAGCTGTGGCGGCTGTCAAGGCAGGAAATGGCGTGGGGCTGATTGTGGCTAGGCATCCTGATGATATCTGGTTTGCATGTGACAATGATTTCCCATGTTTTCAAGTCACTTTTGAAATTGGTACCAAAATATTCTATTACATCCGAGCGACCAGTTCTCCTATGGCGAAGCTGAGCCCTTCAAGAACCATCACAGGCAACCCCATTTCAGCACATATAGCATATTTCTCATCAAGAGGTCCCAACTCTGTAGCACCAGCAATTCTCAAGCCAGATATAGCTGCACCTGGAGTGGCAATATTAGTAGCCACTTCCCCATTTGACCCAACAAATGATGGAGGTTTTACCATACAAACAGGAACTTCCATAGCAACACCTCATATCTCAGCCATTGTGGCTCTTCTCAAGTCACTTCATCCAACTTGGTCACCTGCTGCCATCAAATCTGCCATTCTCACAACTGCATGGAACACTCATCCTTCTGGTGTACCAATTCTGGCCGAGGGATCTCCACAGAAACTTGGCAATCCATTCGACTATGGAGGAGGAATCGTAAACCCAAATGCAGCTGCAAATCCAGGACTCGTATACGATATCTCCACTGCAGATTACATCTCTTACTTTTGCTCAATGGGTTACAACAGCTCAGCCATTTCTCTTCTCACAGAGCACAAAACAAAGTGCCCAAAAAGGCACCAACTTTCTCTGCTGGATCTTAACCTTCCCTCCATAACAGTGCCAGCACTTAGAAACTCAGTCACTGTCACTCGAACTGTGACCAACGTTGGAAATTTGACATCCATTTACAGAGCTCTGGTTGAGCCTCCAATGGGGACGAGTGTCACAGTGGAGCCTCGTGTCTTGGTCTTCAATGCCACTATCAGGAAGATGTCCTTCAAGGTCAGGATTTTGAGCCTTTTAGAGATGGATTATGGGTTTTCTTTTGGAAGCTTAATTTGGAGTGATGGAGTGCATCTTGTTAGAAGTCCTCTGTCAGTGAGAGTTCAAATTCTGCATTCTTCTGCTGGTGTTTAG 2307 49.24 MKNRGWFLVLFLYASVFDGLTVKPQASGKLLHIVYLQGKQHDPKPSTEIHHNFLATVLGSYTHAFSGFAAKLSKSQAHQLAEMPGVVRVLPNVLYELHTTRSWDFLGLSPPSSPSNLLQISNSGDGVIIGVVDTGIWPESEAFNDEGLGPVPRRWRGVCQSGEEFNATRDCNRKIIGAKWYVDGFIAEFGEFNRSAVKEFMSPRDPNGHGTQTASTAAGSFVRNVSYRGLGGGTVRGGAPAARLAVYKACWSLPAGGGQCAAADVLKGLDDAVHDGVDVLSLSLGKSVPLYAEVDEENVVAIGSFRANLRNVSVVCSAGNDGPSAETVVNISPWILSVAASSMDRSFLGSITLGNNNTFLGQTLFSGKEIGYSGLVYPELGLDPNVAAGLCDSVALVNGSDWMAGKVVLCFSRAVGIMNPMAITRAVAAVKAGNGVGLIVARHPDDIWFACDNDFPCFQVTFEIGTKIFYYIRATSSPMAKLSPSRTITGNPISAHIAYFSSRGPNSVAPAILKPDIAAPGVAILVATSPFDPTNDGGFTIQTGTSIATPHISAIVALLKSLHPTWSPAAIKSAILTTAWNTHPSGVPILAEGSPQKLGNPFDYGGGIVNPNAAANPGLVYDISTADYISYFCSMGYNSSAISLLTEHKTKCPKRHQLSLLDLNLPSITVPALRNSVTVTRTVTNVGNLTSIYRALVEPPMGTSVTVEPRVLVFNATIRKMSFKVRILSLLEMDYGFSFGSLIWSDGVHLVRSPLSVRVQILHSSAGV 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8888450 8895132 - Maker00029931 Lcy6g0875 635319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0875 768 Gene3D Peptidase S8/S53 domain 126 628 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0875 768 FunFam Subtilisin-like protease SBT1.5 126 353 - -
Lcy6g0875 768 Pfam Fibronectin type-III domain 662 757 IPR041469 -
Lcy6g0875 768 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
Lcy6g0875 768 CDD Peptidases_S8_3 95 580 IPR034197 -
Lcy6g0875 768 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 15 98 IPR037045 -
Lcy6g0875 768 Pfam Subtilase family 124 585 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g0875 768 ProSiteProfiles Serine proteases, subtilase domain profile. 102 615 - -
Lcy6g0875 768 SUPERFAMILY Subtilisin-like 39 684 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0875 768 Pfam Peptidase inhibitor I9 32 98 IPR010259 -
Lcy6g0875 768 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 755 IPR045051 -
Lcy6g0875 768 PRINTS Subtilisin serine protease family (S8) signature 205 218 IPR015500 -
Lcy6g0875 768 PRINTS Subtilisin serine protease family (S8) signature 124 143 IPR015500 -
Lcy6g0875 768 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
Lcy6g0875 768 CDD PA_subtilisin_like 350 482 - -
Lcy6g0875 768 Gene3D - 632 760 - -
Lcy6g0875 768 Gene3D - 344 489 - -
Lcy6g0875 768 FunFam Subtilisin-like protease SBT1.5 632 760 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0020 Lcy-Chr6:268963 Lcy6g0875 Lcy-Chr6:8888450 1.68E-260 dispersed
Lcy6g0875 Lcy-Chr6:8888450 Lcy6g0878 Lcy-Chr6:8957662 3.86E-294 dispersed
Lcy6g0875 Lcy-Chr6:8888450 Lcy6g0877 Lcy-Chr6:8918815 1.14E-255 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0875 - - - 0.0