Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g0876 | ATGGATTTTGGCTCCTCTTCTGGATTTTCCCTCGAGAATCATCATCATCATCATCATCATCAGTACGACTTTCAGAGCAGCAGCAACAACAACAACCCTGATTCAACTACAGATTTCGAGCAGCAGCAGCAGCAACAACAACAAATGGAATCAAGTTCACTTTTTGTAGAGAAAGAGCACATGTTCGACAAGGTTGTGACTCCAAGCGATGTGGGAAAATTGAACCGCTTAGTGATCCCAAAGCAGCACGCGGAGAAGTACTTTCCACTGGATTCTTCATCGAACGAGAAGGGTCTTCTCCTAAACTTCGAAGACCGCAGTGGAAAATCGTGGCGGTTTCGTTACTCTTACTGGACCAGCAGCCAGAGCTACGTGATGACCAAAGGCTGGAGCCGCTTCGTCAAGGAGAAAAGACTTGACGCCGGTGATATCGTCTCCTTTCAACGAGGGGTTGGAGACGTTGGTAAAGATCGCTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCGGCGGTCGAGACGGCTATCAATTTCCACCACCACGCCGGCGGAGCCGCCCAAATTCCTCACCATTTCCAGCTTCACCAGTGGAGTCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATGTCAGCCTATTTCATAATAATAACCCCTATCGGAATAATCCCTATAATCATCATCATTATCATCATCATAATCACCATCCCGTCGTTACCGCCACTAGTGGTGGTGACAGTGGTTTGTATGGTGGGTCGTCGGTCTTTTACCATCTAAGATCCGCTGTGGAACCGTCTCACGAGGCGGTGCCAGTTGCGACGAGTGGCGGTGGCGGCGGCGGCGGCGGAATTGGAAAAGGTGCTGCAGCTAAGACATTGAGGCTTTTTGGGGTCAACATGGAATGTGCGGTATCTGAGGAGTCGGAGGATGAGTGCGACATGACAACCTCGACGACGACAATGTCGCCCCAATTCCGCATCTACAATGGAATGCCAATGTCAATGCCGATGTCGATGTCGATGCAGATGTCGAACGCTAACAACCTACCGACCACGGACTTCTTCGAGAAAGGGAAGTCGTCTAGGTCGTCCTTAGATTTTGGTACCTGA | 1149 | 49.87 | MDFGSSSGFSLENHHHHHHHQYDFQSSSNNNNPDSTTDFEQQQQQQQQMESSSLFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRSGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGDVGKDRFFIDWRRRPPHAAVETAINFHHHAGGAAQIPHHFQLHQWSPVATPLSLHRDHVLHLPQNNSNHNNVSLFHNNNPYRNNPYNHHHYHHHNHHPVVTATSGGDSGLYGGSSVFYHLRSAVEPSHEAVPVATSGGGGGGGGIGKGAAAKTLRLFGVNMECAVSEESEDECDMTTSTTTMSPQFRIYNGMPMSMPMSMSMQMSNANNLPTTDFFEKGKSSRSSLDFGT | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8911119 | 8912267 | + | Maker00029809 | Lcy6g0876 | 635320 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g0876 | 382 | ProSiteProfiles | B3 DNA-binding domain profile. | 62 | 167 | IPR003340 | GO:0003677(InterPro) | |
Lcy6g0876 | 382 | Pfam | B3 DNA binding domain | 62 | 166 | IPR003340 | GO:0003677(InterPro) | |
Lcy6g0876 | 382 | SMART | B3_2 | 62 | 167 | IPR003340 | GO:0003677(InterPro) | |
Lcy6g0876 | 382 | FunFam | B3 domain-containing protein | 55 | 176 | - | - | |
Lcy6g0876 | 382 | CDD | B3_DNA | 60 | 149 | IPR003340 | GO:0003677(InterPro) | |
Lcy6g0876 | 382 | MobiDBLite | consensus disorder prediction | 24 | 51 | - | - | |
Lcy6g0876 | 382 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 18 | 313 | IPR044800 | GO:0003700(InterPro) | |
Lcy6g0876 | 382 | SUPERFAMILY | DNA-binding pseudobarrel domain | 59 | 165 | IPR015300 | - | |
Lcy6g0876 | 382 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Lcy6g0876 | 382 | Gene3D | - | 55 | 180 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0756 | Lcy-Chr10:22710923 | Lcy6g0876 | Lcy-Chr6:8911119 | 1.13E-23 | dispersed | |
Lcy4g1005 | Lcy-Chr4:17636659 | Lcy6g0876 | Lcy-Chr6:8911119 | 3.63E-68 | dispersed | |
Lcy5g0449 | Lcy-Chr5:4695506 | Lcy6g0876 | Lcy-Chr6:8911119 | 5.92E-49 | dispersed | |
Lcy6g0876 | Lcy-Chr6:8911119 | Lcy7g0437 | Lcy-Chr7:3855395 | 4.74E-45 | dispersed | |
Lcy6g0876 | Lcy-Chr6:8911119 | Lcy12g1482 | Lcy-Chr12:33788159 | 7.69E-71 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20276 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g0876 | K09287 | - | csv:101220139 | 394.045 |