Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0876 ATGGATTTTGGCTCCTCTTCTGGATTTTCCCTCGAGAATCATCATCATCATCATCATCATCAGTACGACTTTCAGAGCAGCAGCAACAACAACAACCCTGATTCAACTACAGATTTCGAGCAGCAGCAGCAGCAACAACAACAAATGGAATCAAGTTCACTTTTTGTAGAGAAAGAGCACATGTTCGACAAGGTTGTGACTCCAAGCGATGTGGGAAAATTGAACCGCTTAGTGATCCCAAAGCAGCACGCGGAGAAGTACTTTCCACTGGATTCTTCATCGAACGAGAAGGGTCTTCTCCTAAACTTCGAAGACCGCAGTGGAAAATCGTGGCGGTTTCGTTACTCTTACTGGACCAGCAGCCAGAGCTACGTGATGACCAAAGGCTGGAGCCGCTTCGTCAAGGAGAAAAGACTTGACGCCGGTGATATCGTCTCCTTTCAACGAGGGGTTGGAGACGTTGGTAAAGATCGCTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCGGCGGTCGAGACGGCTATCAATTTCCACCACCACGCCGGCGGAGCCGCCCAAATTCCTCACCATTTCCAGCTTCACCAGTGGAGTCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATGTCAGCCTATTTCATAATAATAACCCCTATCGGAATAATCCCTATAATCATCATCATTATCATCATCATAATCACCATCCCGTCGTTACCGCCACTAGTGGTGGTGACAGTGGTTTGTATGGTGGGTCGTCGGTCTTTTACCATCTAAGATCCGCTGTGGAACCGTCTCACGAGGCGGTGCCAGTTGCGACGAGTGGCGGTGGCGGCGGCGGCGGCGGAATTGGAAAAGGTGCTGCAGCTAAGACATTGAGGCTTTTTGGGGTCAACATGGAATGTGCGGTATCTGAGGAGTCGGAGGATGAGTGCGACATGACAACCTCGACGACGACAATGTCGCCCCAATTCCGCATCTACAATGGAATGCCAATGTCAATGCCGATGTCGATGTCGATGCAGATGTCGAACGCTAACAACCTACCGACCACGGACTTCTTCGAGAAAGGGAAGTCGTCTAGGTCGTCCTTAGATTTTGGTACCTGA 1149 49.87 MDFGSSSGFSLENHHHHHHHQYDFQSSSNNNNPDSTTDFEQQQQQQQQMESSSLFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRSGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGDVGKDRFFIDWRRRPPHAAVETAINFHHHAGGAAQIPHHFQLHQWSPVATPLSLHRDHVLHLPQNNSNHNNVSLFHNNNPYRNNPYNHHHYHHHNHHPVVTATSGGDSGLYGGSSVFYHLRSAVEPSHEAVPVATSGGGGGGGGIGKGAAAKTLRLFGVNMECAVSEESEDECDMTTSTTTMSPQFRIYNGMPMSMPMSMSMQMSNANNLPTTDFFEKGKSSRSSLDFGT 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8911119 8912267 + Maker00029809 Lcy6g0876 635320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0876 382 ProSiteProfiles B3 DNA-binding domain profile. 62 167 IPR003340 GO:0003677(InterPro)
Lcy6g0876 382 Pfam B3 DNA binding domain 62 166 IPR003340 GO:0003677(InterPro)
Lcy6g0876 382 SMART B3_2 62 167 IPR003340 GO:0003677(InterPro)
Lcy6g0876 382 FunFam B3 domain-containing protein 55 176 - -
Lcy6g0876 382 CDD B3_DNA 60 149 IPR003340 GO:0003677(InterPro)
Lcy6g0876 382 MobiDBLite consensus disorder prediction 24 51 - -
Lcy6g0876 382 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 18 313 IPR044800 GO:0003700(InterPro)
Lcy6g0876 382 SUPERFAMILY DNA-binding pseudobarrel domain 59 165 IPR015300 -
Lcy6g0876 382 MobiDBLite consensus disorder prediction 1 51 - -
Lcy6g0876 382 Gene3D - 55 180 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0756 Lcy-Chr10:22710923 Lcy6g0876 Lcy-Chr6:8911119 1.13E-23 dispersed
Lcy4g1005 Lcy-Chr4:17636659 Lcy6g0876 Lcy-Chr6:8911119 3.63E-68 dispersed
Lcy5g0449 Lcy-Chr5:4695506 Lcy6g0876 Lcy-Chr6:8911119 5.92E-49 dispersed
Lcy6g0876 Lcy-Chr6:8911119 Lcy7g0437 Lcy-Chr7:3855395 4.74E-45 dispersed
Lcy6g0876 Lcy-Chr6:8911119 Lcy12g1482 Lcy-Chr12:33788159 7.69E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20276 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0876 K09287 - csv:101220139 394.045