Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0877 ATGGTGAACAGCGAAGCTCCTTTGATTGTTTCTGTTATGACATTATATGCTTTGTTTTCAATGTTTGCTTACAAATCCATGGCAGAAGAAGCAGACCAAAACCGCAAGGTTCACATCGTTTACCTTGGAGAAAGGCAATACGATGATACTAAATTGACAACTAAGTCTCACCATGATTTACTGGCCACTGTATTGGGAAGCAAGGAGAAGTCATCGGAATCAATGGTGTACAGTTATAGACATGGCTTTTCTGGATTTGCAGCCAAGCTCACCAAGTCTCAAGCTCAACAGCTAGCCGAAATACCAGGGGTGATACGAGTTTTTCCAAGTTCACTTTACAAATTGCATACTACAAGAAGTTGGGATTTTCTTGGCCTCTCCTCTTCTCCGTCTGAGTCATCGAACCTTCTTCATCATGGTAAAATGGGCGACAATGTCATCATAGGTGTCATTGATTCAGGATTCTGGCCGGAGTCGGCGTCTTTTGGAGACAAAGGATTGGGACCAATACCATCACGATGGAAAGGCAAATGCAGATCAGGAGAACTGTTCAATTCCACAAACTGCAACAGGAAAGTCATAGGAGCGCGCTGGTTCGTGAAGGGCTTCATCGCCGATTATGGGCGGGAGGCACTAGCCAACGAATGCTTATCCCCACGAGACACCCATGGACACGGAACCCACACAGCCAGCACAGCTGCAGGTTCATTTGTAACAAATGTTAGCTACCACGGCCTTGGCACTGGTACGCTGAGGGGCGGTGCACCACTCGCACGGTTGGCCATATACAAGGTCACGTGGTTAGGTGGCGGGTCCGCGGCGGACATATTGAAGGGCATAGATGTGGCCATTCACGACGGTGTGGATGTGCTGTCTATATCCCTTGGGGGGTTAATTCCTTTGGTTCCAGAGTTCAACCAAGCAAATGAAATTGCCATTGGGTCATTTCATGCCATTGCGAGGGGGATTCCTGTTGTGTGTGCGGGTGGCAATGAAGGCCCTTATGAGCAGACGGTGGGAAACACTGCGCCTTGGATTTTGACTGTGGCTGCCTCTACAATGGATAGAGCCTTTCTTTCATCAATTACTCTTGGAGATCATAATACCACTTATTTGGGCCAAAGCTTCTTCTATTCCAAAAAGGATCTTGTTGCTGAGTTGACCGTTCCGCCAGATAGAAGATGTGATGACATTTCGGGAAATGAGAATTTTAGTGGGAAAGTTGTTCTCTGCTTCACTGATAAAGTTAATATGTCGGCGGGCACGGCGGTGATGAAAGCAAATGGGAGTGGTATAATTGTCGTCGGCGAAAACATCGATATATTGATTGAGTTTGGCGAATCCTTTCCATTCGTCGTAGTGGATACCGACGTTGGCACAAAATTGTTCTTTCAAGCTTTAGACGACAGTAATCCAATAGTAAGGTTGAGGCGTGCAAAAACCATAATCGGCAAGCCCATATCAACCAGGATTGCCCATTTCTCATCTAGAGGTCCAAATTCTGCTTCACCTGCAATTCTCAAGCCAGACATAGCCGCTCCTGGAGTCAACATTCTAGCTGCCGCTCCACCTCACACTTCCAACTACGAAGGGTTTGACATGATGTCAGGAACTTCCATGGCCACGCCTCATGTTGCTGGCATCGTGGCTCTTCTTAAATCCCTACATCCTACTTGGTCACCTGCGGCCATTAAATCAGCCCTCATCACCACGGCACGTGCAAAGAACCCCTCAGGAATTCCCATTTTCGCCAGTGGCAGTCCTCCCAAAGTCGCCGACCCATTTGACTACGGCGGTGGAGTGGTGGATCCCAACGCCGCCGCCGACCCAGGTCTGATCTACGATCTGGGCACCAGTGATTACATATATTATTACCTCTGCGCCATGGGTTATAAGGTTTCAGACATTTCTCACCTAACCAAGCAAAAAACAAAGTGTCCCTTGCAGAGACCTTCTGTGTTGGACTTGAACCTGTCGACCATTACAGTGCCTGAACTCACAAACTCCACCACTGTGACTCGAACTGTGACCAATGTAGGGAACATGACCTCCATTTATAGGGCAGTGGTCGAGCCTCCCCCTGGCACCAAGGGAAGGCTTGTCTGTGGTACTTTGTTCGAGGGGAGGATTGTTGGGAATTGGGAGTGCAACCAAAGTCCCACATTGGCTAGACAAGGGGATGATCATGGGTTTATAAGGGAGGACAAGTATCTCCATTGGTATGAGGCCTTTTGGGTGGAACCAAAAGCAAAGCCATGA 2259 48.07 MVNSEAPLIVSVMTLYALFSMFAYKSMAEEADQNRKVHIVYLGERQYDDTKLTTKSHHDLLATVLGSKEKSSESMVYSYRHGFSGFAAKLTKSQAQQLAEIPGVIRVFPSSLYKLHTTRSWDFLGLSSSPSESSNLLHHGKMGDNVIIGVIDSGFWPESASFGDKGLGPIPSRWKGKCRSGELFNSTNCNRKVIGARWFVKGFIADYGREALANECLSPRDTHGHGTHTASTAAGSFVTNVSYHGLGTGTLRGGAPLARLAIYKVTWLGGGSAADILKGIDVAIHDGVDVLSISLGGLIPLVPEFNQANEIAIGSFHAIARGIPVVCAGGNEGPYEQTVGNTAPWILTVAASTMDRAFLSSITLGDHNTTYLGQSFFYSKKDLVAELTVPPDRRCDDISGNENFSGKVVLCFTDKVNMSAGTAVMKANGSGIIVVGENIDILIEFGESFPFVVVDTDVGTKLFFQALDDSNPIVRLRRAKTIIGKPISTRIAHFSSRGPNSASPAILKPDIAAPGVNILAAAPPHTSNYEGFDMMSGTSMATPHVAGIVALLKSLHPTWSPAAIKSALITTARAKNPSGIPIFASGSPPKVADPFDYGGGVVDPNAAADPGLIYDLGTSDYIYYYLCAMGYKVSDISHLTKQKTKCPLQRPSVLDLNLSTITVPELTNSTTVTRTVTNVGNMTSIYRAVVEPPPGTKGRLVCGTLFEGRIVGNWECNQSPTLARQGDDHGFIREDKYLHWYEAFWVEPKAKP 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8918815 8937368 - Maker00029930 Lcy6g0877 635321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0877 752 Pfam Fibronectin type-III domain 655 697 IPR041469 -
Lcy6g0877 752 Gene3D - 626 705 - -
Lcy6g0877 752 ProSitePatterns Serine proteases, subtilase family, serine active site. 537 547 IPR023828 -
Lcy6g0877 752 Pfam Peptidase inhibitor I9 37 116 IPR010259 -
Lcy6g0877 752 CDD Peptidases_S8_3 113 572 IPR034197 -
Lcy6g0877 752 FunFam Subtilisin-like protease SBT1.5 145 364 - -
Lcy6g0877 752 PRINTS Subtilisin serine protease family (S8) signature 143 162 IPR015500 -
Lcy6g0877 752 PRINTS Subtilisin serine protease family (S8) signature 536 552 IPR015500 -
Lcy6g0877 752 PRINTS Subtilisin serine protease family (S8) signature 221 234 IPR015500 -
Lcy6g0877 752 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 38 692 IPR045051 -
Lcy6g0877 752 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 116 IPR037045 -
Lcy6g0877 752 Pfam Subtilase family 143 577 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g0877 752 CDD PA_subtilisin_like 361 476 - -
Lcy6g0877 752 FunFam Subtilisin-like protease SBT5.3 26 116 - -
Lcy6g0877 752 SUPERFAMILY Subtilisin-like 23 678 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0877 752 Gene3D - 355 483 - -
Lcy6g0877 752 Gene3D Peptidase S8/S53 domain 145 621 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0877 752 ProSiteProfiles Serine proteases, subtilase domain profile. 120 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0869 Lcy-Chr6:8786657 Lcy6g0877 Lcy-Chr6:8918815 0 dispersed
Lcy6g0871 Lcy-Chr6:8811593 Lcy6g0877 Lcy-Chr6:8918815 0 dispersed
Lcy6g0877 Lcy-Chr6:8918815 Lcy9g0103 Lcy-Chr9:2228919 0 dispersed
Lcy6g0875 Lcy-Chr6:8888450 Lcy6g0877 Lcy-Chr6:8918815 1.14E-255 proximal
Lcy6g0877 Lcy-Chr6:8918815 Lcy6g0878 Lcy-Chr6:8957662 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0877 - - - 0.0