Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0878 ATGGTGAACAGCCAAGGTCGTTTGATTGTTGGTGTTATGACAATTTATGCTTTGTTTTCAATGTTTGCCTACAAACCCATGGCCGAAGCTGATGATCAAAATCGTAAGGTTCACATCGTTTACCTCGGAGAAAGGCAACACGATGATACTAAATTGACAACTCAATCTCACCATGATTTACTGGCCACTGTATTAGGGAGCAAGGAGAAGTCATCAGAATCAATGGTGTACAGTTACAGACATGGCTTTTCTGGGTTTGCTGCCAAGCTCACCAGGTCTCAGGCTCAAAAGCTAGCTGAAATACCGGAGGTGATTCGAGTTTTTCCAAGTTCGCTTTACAAATTGCATACTACAAGAAGCTGGGATTTCCTCGGCCTCTCCTCTTCTCCCTCTGAATCATCCAACCTTCTTCATCGTGCTAAAATGGGCGACAATGTTATTATCGGTGTCGTCGATTCAGGATACTGGCCAGAGTCGGAGTCTTTCGGAGACAAAGGGCTGGGTCCCGTGCCATCACGATGGAAAGGCACGTGCGAATCAGGAGAAGAATTCAATTCCACAAATTGTAATAGAAAAGTCATAGGAGCACGTTGGTACATGAAGGGCTTTGTCGCGGACAATGGGCGGGAGGCACTGGCTGACGAATACTTATCTCCACGAGACATCAACGGACATGGAACCCACACGGCCAGCACGGCTGCAGGTTCATTCGTGACGAATGTCAGCTACCACGGCCTTGGCGTCGGCACTTTGAGGGGTGGTGCGCCACTCGCGCGCTTGGCCATTTACAAGGCCTTGTGGACCTCCGACTGCGTGGGGTCGGCGGCGGACATATTGAAGGCCATCGATGAGGCCATCCACGATGGCGTTGACGTGCTGTCTATATCGATTGGGCGTTTTATTCCTTTGTTTCCGGAGTTTAATGAAGAAAACGAAATTGCAATTGGGTCGTTTCATGCTGTTGCGAGGGGAATTTCTGTTGTGTGTGCTGGTGGAAATGATGGGCCTCTGCAGCAGACGGTGCAGAACACTGCGCCTTGGATTTTGACTGTGGCTGCCAGTACCATGGATAGAGCTTTTCTTTCCTCCATTACTCTCCCAGATAACACCACTTATTTGGGCCAAAGCTTCTACGATTCGGAAAAGGAGCTTGTTGCTAAGTTGACAACTGCATCGAATGGAAGATGTAGTGACATTTTGGGAAATGAAACTTTTATAAGTGGAAAGGTTGTTCTCTGCTTCTCTGATATAGCTGATAAGACGGCCGCTAACATGGCGGCAGCGGCGGCGGTAAAAGCAAATGGGAGTGGGATAATTGTCGCCGGCCAACAGGACGATGACTTGTTTGCATGTAAACAGCCCTTTCCTTGCATCCTAGTGGACAACACCGTCGGCACAAAATTGCTTTTTCACGTCTTGGAAGGGAGTAATCCAATGGTAAGGTTGGGGCGAGCAAAAACCATCATCGGCAAGCCTATATCAACCAGGATAGTCTATTTCTCATCTAGAGGTCCAAATTCTGCTTCACCTGCAATTCTCAAGCGAGATATAGCCGCTCCAGGATCTAATATTCTAGCTGCCATTTCACCCCACCACTCGTCCAACGACAAAGGGTTTGGAATGATGTCGGGAACTTCCATGGCCGCGCCTCATATCTCTGGTATCGTGGCTCTTCTTAGATCCCTCCGTCCTACTTGGTCACCTGCTGCAATCAAATCAGCCCTCATCACCACTGCACGTGCAAAGAGTCCCTCAGGATTGCCCATTTTTGCGAATGGCAGTCCTCCCAAAGCTGCCGACCCATTTGACCATGGCGGTGGAGTGGTGGACCCGAACGCTGCCATCGACCCAGGTCTCATCTACGATCTGGACACCATAGAATACATATATTACCTTTGTGGCATGGGTTACAAGGGCTCGGATATTTCTCAACTAACCCAACAAAAGACTGAATGCCCGTTTCCGAGGCCATCAGTGTTGGACTTGAATTTGCCGACCATTACAGTACCTGAACTCAGAAACTCCACCACTGTGACTCGAACTGTGACGAATGTAGGGAACGTGACCTCCATTTATAGGGCAATGATCGAGGCTCCACCTGGCTCCAAGGTCACTGTTGAGCCCCAGGTGTTGGCCTTTAACTCCAAAGTGAGAAAGATTTCATTTAAGGTTACGTTTTCCACTGCCCTCCAAAATAATTATGGATACTCTTTTGGAAGCTTAACGTGGACTGATGGAGTGCATCTTGTTAAAACTCCCTTGACTGTGCGAATTGATTTCTTTTGA 2286 48.29 MVNSQGRLIVGVMTIYALFSMFAYKPMAEADDQNRKVHIVYLGERQHDDTKLTTQSHHDLLATVLGSKEKSSESMVYSYRHGFSGFAAKLTRSQAQKLAEIPEVIRVFPSSLYKLHTTRSWDFLGLSSSPSESSNLLHRAKMGDNVIIGVVDSGYWPESESFGDKGLGPVPSRWKGTCESGEEFNSTNCNRKVIGARWYMKGFVADNGREALADEYLSPRDINGHGTHTASTAAGSFVTNVSYHGLGVGTLRGGAPLARLAIYKALWTSDCVGSAADILKAIDEAIHDGVDVLSISIGRFIPLFPEFNEENEIAIGSFHAVARGISVVCAGGNDGPLQQTVQNTAPWILTVAASTMDRAFLSSITLPDNTTYLGQSFYDSEKELVAKLTTASNGRCSDILGNETFISGKVVLCFSDIADKTAANMAAAAAVKANGSGIIVAGQQDDDLFACKQPFPCILVDNTVGTKLLFHVLEGSNPMVRLGRAKTIIGKPISTRIVYFSSRGPNSASPAILKRDIAAPGSNILAAISPHHSSNDKGFGMMSGTSMAAPHISGIVALLRSLRPTWSPAAIKSALITTARAKSPSGLPIFANGSPPKAADPFDHGGGVVDPNAAIDPGLIYDLDTIEYIYYLCGMGYKGSDISQLTQQKTECPFPRPSVLDLNLPTITVPELRNSTTVTRTVTNVGNVTSIYRAMIEAPPGSKVTVEPQVLAFNSKVRKISFKVTFSTALQNNYGYSFGSLTWTDGVHLVKTPLTVRIDFF 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8957662 8964859 - Maker00029776 Lcy6g0878 635322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0878 761 Pfam Subtilase family 143 583 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g0878 761 FunFam Subtilisin-like protease SBT5.3 27 116 - -
Lcy6g0878 761 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
Lcy6g0878 761 Pfam Peptidase inhibitor I9 37 116 IPR010259 -
Lcy6g0878 761 Gene3D - 632 758 - -
Lcy6g0878 761 CDD PA_subtilisin_like 363 482 - -
Lcy6g0878 761 SUPERFAMILY Subtilisin-like 17 683 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0878 761 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 23 116 IPR037045 -
Lcy6g0878 761 FunFam Subtilisin-like protease SBT1.5 145 366 - -
Lcy6g0878 761 FunFam Subtilisin-like protease SBT1.5 632 759 - -
Lcy6g0878 761 CDD Peptidases_S8_3 113 579 IPR034197 -
Lcy6g0878 761 Gene3D - 357 489 - -
Lcy6g0878 761 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 38 753 IPR045051 -
Lcy6g0878 761 Pfam Fibronectin type-III domain 661 756 IPR041469 -
Lcy6g0878 761 Gene3D Peptidase S8/S53 domain 145 628 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0878 761 ProSiteProfiles Serine proteases, subtilase domain profile. 120 615 - -
Lcy6g0878 761 PRINTS Subtilisin serine protease family (S8) signature 221 234 IPR015500 -
Lcy6g0878 761 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
Lcy6g0878 761 PRINTS Subtilisin serine protease family (S8) signature 143 162 IPR015500 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0875 Lcy-Chr6:8888450 Lcy6g0878 Lcy-Chr6:8957662 3.86E-294 dispersed
Lcy6g0878 Lcy-Chr6:8957662 Lcy9g0103 Lcy-Chr9:2228919 0 dispersed
Lcy6g0877 Lcy-Chr6:8918815 Lcy6g0878 Lcy-Chr6:8957662 0 tandem
Lcy6g0878 Lcy-Chr6:8957662 Lcy6g0879 Lcy-Chr6:8974612 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0878 - - - 0.0