Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0879 ATGTTGGATAGAAGAAATAAAGGGGAAGACATTGAAGCAGGTGTTGAAGGTGCTGAGGAAGAGGCCATGGTTCACATCGTTTACCTCGGAGAAAGGCAACACGATGATACTAAATTGACAACTCAATCTCACCATGATTTACTGGCCACTGTATTAGGGAGCAAGGAGAAGTCATCAGAATCAATGGTGTACAGTTACAGACATGGCTTTTCTGGGTTTGCTGCCAAGCTCACCAGGTCTCAGGCTCAAAAGCTAGCTGAAATACCGGAGGTGATTCGAGTTTTTCCAAGTTCGCTTTACAAATTGCATACTACAAGAAGCTGGGATTTCCTCGGCCTCTCCTCTTCTCCCTCTGAATCATCCAACCTTCTTCATCGTGCTAAAATGGGCGACAATGTTATTATCGGTGTCGTCGATTCAGGATACTGGCCAGAGTCGGAGTCTTTCGGAGACAAAGGGCTGGGTCCCGTGCCATCACGATGGAAAGGCACGTGCGAATCAGGAGAAGAATTCAATTCCACAAATTGTAATAGAAAAGTCATAGGAGCACGTTGGTACATGAAGGGCTTTGTCGCGGACAATGGGCGGGAGGCACTGGCTGACGAATACTTATCTCCACGAGACATCAACGGACATGGAACCCACACGGCCAGCACGGCTGCAGGTTCATTCGTGACGAATGTCAGCTACCACGGCCTTGGCGTCGGCACTTTGAGGGGTGGTGCGCCACTCGCGCGCTTGGCCATTTACAAGGCCTTGTGGACCTCCGACTGCGTGGGGTCGGCGGCGGACATATTGAAGGCCATCGATGAGGCCATCCACGATGGCGTTGACGTGCTGTCTATATCGATTGGGCGTTTTATTCCTTTGTTTCCGGAGTTTAATGAAGAAAACGAAATTGCAATTGGGTCGTTTCATGCTGTTGCGAGGGGAATTTCTGTTGTGTGTGCTGGTGGAAATGATGGGCCTCTGCAGCAGACGGTGCAGAACACTGCGCCTTGGATTTTGACTGTGGCTGCCAGTACCATGGATAGAGCTTTTCTTTCCTCCATTACTCTCCCAGATAACACCACTTATTTGGGCCAAAGCTTCTACGATTCGGAAAAGGAGCTTGTTGCTAAGTTGACAACTGCATCGAATGGAAGAGTTATCAGATTCTATCCGTATCTATCACTGATAGACTCTGATTATTCAAAATGTAGTGACATTTTGGGAAATGAAACTTTTATAAGTGGAAAGGTTGTTCTCTGCTTCTCTGATATAGCTGATAAGACGGCCGCTAACATGGCGGCAGCGGCGGCGGTAAAAGCAAATGGGAGTGGGATAATTGTCGCCGGCCAACAGGACGATGACTTGTTTGCATTGGACAACACCGTCGGCACAAAATTGCTTTTTCACGTCTTGGAAGGGAGTAATTATTCTCGTGAGCAGCGAGATATAGCCGCTCCAGGATCTAATATTCTAGCTGCCATTTCACCCCACCACTCGTCCAACGACAAAGGGTTTGGAATGATGTCGGGAACTTCCATGGCCGCGCCTCATATCTCTGGTATCGTGGCTCTTCTTAGATCCCTCCGTCCTACTTGGTCACCTGCTGCAATCAAATCAGCCCTCATCACCACTGCACGTGCAAAGAGTCCCTCAGGATTGCCCATTTTTGCGAATGGCAGTCCTCCCAAAGCTGCCGACCCATTTGACCATGGCGGTGGAGTGGTGGACCCGAACGCTGCCATCGACCCAGGTCTCATCTACGATCTGGACACCATAGAATACATATATTACCTTTGTGGCATGGGTTACAAGGGCTCGGATATTTCTCAACTAACCCAACAAAAGACTGAATGCCCGTTTCCGAGGCCATCAGTGTTGGACTTGAATTTGCCGACCATTACAGTACCTGAACTCAGAAACTCCACCACTGTGACTCGAACTGTGACGAATGTAGGGAACGTGACCTCCATTTATAGGGCAATGATCGAGGCTCCACCTGGCTCCAAGGTCACTGTTGAGCCCCAGGTGTTGGCCTTTAACTCCAAAGTGAGAAAGATTTCATTTAAGGTTACGTTTTCCACTGCCCTCCAAAATAATTATGGATACTCTTTTGGAAGCTTAACGTGGACTGATGGAGTGCATCTTGTTAAAACTCCCTTGACTGTGCGAATTGATTTCTTTTGA 2175 48.37 MLDRRNKGEDIEAGVEGAEEEAMVHIVYLGERQHDDTKLTTQSHHDLLATVLGSKEKSSESMVYSYRHGFSGFAAKLTRSQAQKLAEIPEVIRVFPSSLYKLHTTRSWDFLGLSSSPSESSNLLHRAKMGDNVIIGVVDSGYWPESESFGDKGLGPVPSRWKGTCESGEEFNSTNCNRKVIGARWYMKGFVADNGREALADEYLSPRDINGHGTHTASTAAGSFVTNVSYHGLGVGTLRGGAPLARLAIYKALWTSDCVGSAADILKAIDEAIHDGVDVLSISIGRFIPLFPEFNEENEIAIGSFHAVARGISVVCAGGNDGPLQQTVQNTAPWILTVAASTMDRAFLSSITLPDNTTYLGQSFYDSEKELVAKLTTASNGRVIRFYPYLSLIDSDYSKCSDILGNETFISGKVVLCFSDIADKTAANMAAAAAVKANGSGIIVAGQQDDDLFALDNTVGTKLLFHVLEGSNYSREQRDIAAPGSNILAAISPHHSSNDKGFGMMSGTSMAAPHISGIVALLRSLRPTWSPAAIKSALITTARAKSPSGLPIFANGSPPKAADPFDHGGGVVDPNAAIDPGLIYDLDTIEYIYYLCGMGYKGSDISQLTQQKTECPFPRPSVLDLNLPTITVPELRNSTTVTRTVTNVGNVTSIYRAMIEAPPGSKVTVEPQVLAFNSKVRKISFKVTFSTALQNNYGYSFGSLTWTDGVHLVKTPLTVRIDFF 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8974612 8982931 + Maker00030155 Lcy6g0879 635323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0879 724 Pfam Subtilase family 130 546 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g0879 724 SUPERFAMILY Subtilisin-like 26 646 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0879 724 CDD Peptidases_S8_3 100 542 IPR034197 -
Lcy6g0879 724 Gene3D - 344 450 - -
Lcy6g0879 724 FunFam Subtilisin-like protease SBT5.3 14 103 - -
Lcy6g0879 724 FunFam Subtilisin-like protease SBT1.5 132 353 - -
Lcy6g0879 724 ProSiteProfiles Serine proteases, subtilase domain profile. 107 578 - -
Lcy6g0879 724 Gene3D Peptidase S8/S53 domain 132 343 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0879 724 Gene3D Peptidase S8/S53 domain 479 591 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0879 724 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 10 103 IPR037045 -
Lcy6g0879 724 Gene3D - 595 721 - -
Lcy6g0879 724 FunFam Subtilisin-like protease SBT1.5 595 722 - -
Lcy6g0879 724 Pfam Peptidase inhibitor I9 24 103 IPR010259 -
Lcy6g0879 724 Pfam Fibronectin type-III domain 624 719 IPR041469 -
Lcy6g0879 724 PRINTS Subtilisin serine protease family (S8) signature 208 221 IPR015500 -
Lcy6g0879 724 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Lcy6g0879 724 PRINTS Subtilisin serine protease family (S8) signature 506 522 IPR015500 -
Lcy6g0879 724 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 25 450 IPR045051 -
Lcy6g0879 724 ProSitePatterns Serine proteases, subtilase family, serine active site. 507 517 IPR023828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0879 Lcy-Chr6:8974612 Lcy9g0103 Lcy-Chr9:2228919 0 dispersed
Lcy6g0878 Lcy-Chr6:8957662 Lcy6g0879 Lcy-Chr6:8974612 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0879 - - - 0.0