Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0892 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAAGCTGCCCTTTGCCGCTCTTGTGACGAGAAGATTGTTAGCTTGGATGATAATTTGATTGATCTTCAACCACTTGGTTTCGATGCTGGGACCTCCAGTCATGTTCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGCGATATATGCGAGAATGCACCTGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTAAGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGGTCCGTCTCCACACTCCAAGGTTCCCAATGATATTGGTAAAGGACATAATCAGCCACTGCCGCATAAAGTGACAGTTGAGGACAACCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCTAACGACGATGGTCATGCCGAGACTGATACGAAAATGATCGATTTGAATATGAAACCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGTTCTAATGCTTTTCCTCATCTCTTCCTCCATGGTGTTTACTGTTTAA 648 45.22 MRTLCDACESAAAIVFCAADEAALCRSCDEKIVSLDDNLIDLQPLGFDAGTSSHVHMCNKLASRHVRVGLANPSDVPRCDICENAPDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDGPSPHSKVPNDIGKGHNQPLPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPQRVHGQAANNQVLMLFLISSSMVFTV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9103017 9105621 + Maker00029903 Lcy6g0892 635336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0892 215 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 188 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy6g0892 215 MobiDBLite consensus disorder prediction 123 145 - -
Lcy6g0892 215 SMART bboxneu5 74 112 IPR000315 GO:0008270(InterPro)
Lcy6g0892 215 SMART bboxneu5 1 35 IPR000315 GO:0008270(InterPro)
Lcy6g0892 215 ProSiteProfiles Zinc finger B-box type profile. 1 30 IPR000315 GO:0008270(InterPro)
Lcy6g0892 215 CDD Bbox1_BBX-like 4 70 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0892 Lcy-Chr6:9103017 Lcy8g1175 Lcy-Chr8:38136515 9.89E-46 dispersed
Lcy1g0650 Lcy-Chr1:5566956 Lcy6g0892 Lcy-Chr6:9103017 4.17E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0892 - - - 0.0