Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0905 ATGTCGCTCAAAAGTTTTGTTAGAGAGCTCCGAGAGATGAAAGATGGAATTGGGAGCATTTCAAAACGAGGAGAAGAAGGGAGTAGGCATTGGAGAAACCGCACAATGTCACATATTGCACCAGATCAAGAACCTTCACCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCTGAATTACTTTTAGATATCATCCGGAGAGTGGAAGAGAGTGAAGCCTCATGGCCTGCTCGAGCTGTAGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGCATGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCTGGTACTGACTTTATCATATCTTTAGCAGCTGATGATTTCTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGAACGAAGTTCTCGATATATGACAGCCAGCCTCCTTGTGACCCTGCAGCTTGGCAAAATAGCCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATGTAACTACAGTGTAGGTACAATTTCTTATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACGATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACCCCTACATCATTCACTTACTCTATCGATGACCAGCTTTCTTCCATGTCCCATTCTATGAGAAAGGATTCAGCCAAGGACTTTGGCCCGAAGACCCTATCAGAACCAGCAGTTCAGGGTTCGGATGAATCCCTGGTGCTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAACTTCAGAGGACGTGTGACCGTGGCATCCGTTAAGAACTTCCAACTCGTCGCAGCTGTTGATCAATCTCACAATGTCTCAGTGGAAGAACAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACTATGGATTATCACTATCCTCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1242 46.46 MSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESEASWPARAVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGMVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAWQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDQLSSMSHSMRKDSAKDFGPKTLSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9221119 9224423 + Maker00029728 Lcy6g0905 635349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0905 413 Pfam F-box-like 56 99 IPR001810 GO:0005515(InterPro)
Lcy6g0905 413 Gene3D - 50 104 - -
Lcy6g0905 413 PANTHER TUBBY-RELATED 42 412 - -
Lcy6g0905 413 SUPERFAMILY F-box domain 50 100 IPR036047 GO:0005515(InterPro)
Lcy6g0905 413 SUPERFAMILY Tubby C-terminal domain-like 105 413 IPR025659 -
Lcy6g0905 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Lcy6g0905 413 Gene3D Tubby Protein; Chain A 115 413 IPR025659 -
Lcy6g0905 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Lcy6g0905 413 FunFam Tubby-like F-box protein 113 413 - -
Lcy6g0905 413 CDD F-box_AtTLP-like 56 100 - -
Lcy6g0905 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Lcy6g0905 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Lcy6g0905 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Lcy6g0905 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Lcy6g0905 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lcy6g0905 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Lcy6g0905 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Lcy6g0905 413 Pfam Tub family 117 408 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1353 Lcy-Chr10:36683909 Lcy6g0905 Lcy-Chr6:9221119 1.78E-153 dispersed
Lcy11g1455 Lcy-Chr11:38444903 Lcy6g0905 Lcy-Chr6:9221119 5.71E-148 dispersed
Lcy13g0203 Lcy-Chr13:2099147 Lcy6g0905 Lcy-Chr6:9221119 7.16E-149 dispersed
Lcy6g0658 Lcy-Chr6:6240940 Lcy6g0905 Lcy-Chr6:9221119 1.36E-121 dispersed
Lcy6g0905 Lcy-Chr6:9221119 Lcy9g0979 Lcy-Chr9:32733901 1.79E-144 dispersed
Lcy1g0706 Lcy-Chr1:6046801 Lcy6g0905 Lcy-Chr6:9221119 3.45E-220 wgd
Lcy6g0905 Lcy-Chr6:9221119 Lcy9g2212 Lcy-Chr9:46712159 2.96E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20278 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0905 K19600 - csv:101205595 778.089