Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0914 ATGATGCACCACTGCGGCGGCGGCGGCGGCCCCTCTTCCTTTTCTGTTTTCTTGTCTGTCCCCAACCACGGCGCCGCCCATGAGATGATGGATATCTATTCTACTAATTACCCCTCTTCCTCCTCCTCCTCCTCTCCTTCTTCCGTCGATTGTACTCTCTCTCTCGGCACTCCCTCCACGCGATCGTCGGAATTGGATGCCGACAAACGCGCCGCCGCACGCCACCACCGGCGCTCTGCCGGCTCTTATGTCTCTAACTTCTGTTGGGATTTGTTGCACCCCAAACACAAGAGTACCGGCCGTTCCGGTGCTGGTAATAGTGCCGCCGCGCTCCCCGGCGGCGATCCACTTCTTGCTCGGCGGTGCGCTAACTGCGACACCACGTCCACTCCGCTTTGGAGAAATGGGCCGAGAGGGCCTAAGTCTTTATGCAATGCGTGTGGGATTCGATTCAAGAAGGAAGAGCGGCGGGCGGCGGCGACGGTGAACACCACGGCGGCCGGAGCGGTGGCGGAATCAAATCACCACCACCATTACCAACAACAACACCACCACCACATGTTCGGCGGGAACTATACGAATTCAACTACGTGGGTCCCACAACACTCGCCGGTGACGACCCAGAAACTTCCATGCCTGTCGCCGGCCGCCATGAACAACGAATCGATGTTCATCGGAAACGACGACGTTCGAAGAACGGAACCCGAAAATGGAATTCCGTTCCTCTCTTGGCGCCTTAACGTTACCGATCACCGGCCCAGCCTCGTCCCCGACTTCACAAGATGA 786 58.14 MMHHCGGGGGPSSFSVFLSVPNHGAAHEMMDIYSTNYPSSSSSSSPSSVDCTLSLGTPSTRSSELDADKRAAARHHRRSAGSYVSNFCWDLLHPKHKSTGRSGAGNSAAALPGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAATVNTTAAGAVAESNHHHHYQQQHHHHMFGGNYTNSTTWVPQHSPVTTQKLPCLSPAAMNNESMFIGNDDVRRTEPENGIPFLSWRLNVTDHRPSLVPDFTR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9274699 9275833 - Maker00029824 Lcy6g0914 635358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0914 261 PANTHER GATA TRANSCRIPTION FACTOR 18 11 258 - -
Lcy6g0914 261 FunFam GATA transcription factor 15 118 170 - -
Lcy6g0914 261 CDD ZnF_GATA 121 153 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 ProSiteProfiles GATA-type zinc finger domain profile. 116 152 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 MobiDBLite consensus disorder prediction 36 62 - -
Lcy6g0914 261 SMART GATA_3 116 168 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 ProSitePatterns GATA-type zinc finger domain. 122 147 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 Pfam GATA zinc finger 122 156 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 157 - -
Lcy6g0914 261 MobiDBLite consensus disorder prediction 36 73 - -
Lcy6g0914 261 Gene3D - 118 185 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0914 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0710 Lcy-Chr1:6075074 Lcy6g0914 Lcy-Chr6:9274699 1.85E-32 dispersed
Lcy2g0913 Lcy-Chr2:8372111 Lcy6g0914 Lcy-Chr6:9274699 1.49E-13 dispersed
Lcy2g2257 Lcy-Chr2:47012170 Lcy6g0914 Lcy-Chr6:9274699 8.11E-15 dispersed
Lcy4g0098 Lcy-Chr4:1372254 Lcy6g0914 Lcy-Chr6:9274699 8.91E-06 dispersed
Lcy6g0914 Lcy-Chr6:9274699 Lcy9g0385 Lcy-Chr9:10833359 2.11E-13 dispersed
Lcy1g0653 Lcy-Chr1:5616528 Lcy6g0914 Lcy-Chr6:9274699 5.50E-09 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1431 . 81 374 C2C2-Gata Transcription Factor Family AT5G25830 52.9 1.4e-69 260.8
Lcy6g0914 . 13 262 C2C2-Gata Transcription Factor Family AT3G50870 52.3 2.8e-37 153.3
Lcy6g0944 . 99 372 C2C2-Gata Transcription Factor Family AT3G51080 50.7 2.0e-54 210.3
Lcy1g0653 . 112 288 C2C2-Gata Transcription Factor Family AT4G36240 51.9 9.7e-41 164.5
Lcy12g1875 . 19 543 C2C2-Gata Transcription Factor Family AT4G17570 50.1 2.9e-122 436.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002166 2 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 2 2 2 2 2 4 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20280 None None None None Lcy TF