Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0914 ATGATGCACCACTGCGGCGGCGGCGGCGGCCCCTCTTCCTTTTCTGTTTTCTTGTCTGTCCCCAACCACGGCGCCGCCCATGAGATGATGGATATCTATTCTACTAATTACCCCTCTTCCTCCTCCTCCTCCTCTCCTTCTTCCGTCGATTGTACTCTCTCTCTCGGCACTCCCTCCACGCGATCGTCGGAATTGGATGCCGACAAACGCGCCGCCGCACGCCACCACCGGCGCTCTGCCGGCTCTTATGTCTCTAACTTCTGTTGGGATTTGTTGCACCCCAAACACAAGAGTACCGGCCGTTCCGGTGCTGGTAATAGTGCCGCCGCGCTCCCCGGCGGCGATCCACTTCTTGCTCGGCGGTGCGCTAACTGCGACACCACGTCCACTCCGCTTTGGAGAAATGGGCCGAGAGGGCCTAAGTCTTTATGCAATGCGTGTGGGATTCGATTCAAGAAGGAAGAGCGGCGGGCGGCGGCGACGGTGAACACCACGGCGGCCGGAGCGGTGGCGGAATCAAATCACCACCACCATTACCAACAACAACACCACCACCACATGTTCGGCGGGAACTATACGAATTCAACTACGTGGGTCCCACAACACTCGCCGGTGACGACCCAGAAACTTCCATGCCTGTCGCCGGCCGCCATGAACAACGAATCGATGTTCATCGGAAACGACGACGTTCGAAGAACGGAACCCGAAAATGGAATTCCGTTCCTCTCTTGGCGCCTTAACGTTACCGATCACCGGCCCAGCCTCGTCCCCGACTTCACAAGATGA 786 58.14 MMHHCGGGGGPSSFSVFLSVPNHGAAHEMMDIYSTNYPSSSSSSSPSSVDCTLSLGTPSTRSSELDADKRAAARHHRRSAGSYVSNFCWDLLHPKHKSTGRSGAGNSAAALPGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAATVNTTAAGAVAESNHHHHYQQQHHHHMFGGNYTNSTTWVPQHSPVTTQKLPCLSPAAMNNESMFIGNDDVRRTEPENGIPFLSWRLNVTDHRPSLVPDFTR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9274699 9275833 - Maker00029824 Lcy6g0914 635358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0914 261 PANTHER GATA TRANSCRIPTION FACTOR 18 11 258 - -
Lcy6g0914 261 FunFam GATA transcription factor 15 118 170 - -
Lcy6g0914 261 CDD ZnF_GATA 121 153 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 ProSiteProfiles GATA-type zinc finger domain profile. 116 152 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 MobiDBLite consensus disorder prediction 36 62 - -
Lcy6g0914 261 SMART GATA_3 116 168 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 ProSitePatterns GATA-type zinc finger domain. 122 147 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 Pfam GATA zinc finger 122 156 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0914 261 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 157 - -
Lcy6g0914 261 MobiDBLite consensus disorder prediction 36 73 - -
Lcy6g0914 261 Gene3D - 118 185 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0710 Lcy-Chr1:6075074 Lcy6g0914 Lcy-Chr6:9274699 1.85E-32 dispersed
Lcy2g0913 Lcy-Chr2:8372111 Lcy6g0914 Lcy-Chr6:9274699 1.49E-13 dispersed
Lcy2g2257 Lcy-Chr2:47012170 Lcy6g0914 Lcy-Chr6:9274699 8.11E-15 dispersed
Lcy4g0098 Lcy-Chr4:1372254 Lcy6g0914 Lcy-Chr6:9274699 8.91E-06 dispersed
Lcy6g0914 Lcy-Chr6:9274699 Lcy9g0385 Lcy-Chr9:10833359 2.11E-13 dispersed
Lcy1g0653 Lcy-Chr1:5616528 Lcy6g0914 Lcy-Chr6:9274699 5.50E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20280 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0914 - - - 0.0