Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0925 ATGGCTACATTCGTCGAGCCCCCGAGCGGAATCAGGTCAATGGGGAAGCATTATTACACAATGTGGCAGACTCTGTTTGAAATTGATACTAAGTATGTTCCAATCAAGCCGATTGGACGAGGAGCTTACGGTGTGGTGTGTTCTTCGATCAACCGAGAGACCAACGAGAAAGTGGCGATCAAGAAGATTAACAATGTGTTTGAGAATCGCACTGACGCCATGAGAACGCTGAGGGAGCTGAAGCTTCTGAGGCACATAAGGCATGAGAACGTGATTGCTTTGAAGGATGTGATGATGCCGATCCATAGAAAAAATTTTAAGGATGTGTATTTGGTTTATGAACTCATGGATACTGATCTTCATCAGATTATCAAATCCTCTCAGCCCCTTTCCAATGATCATTGCAAGTATTTTATCTATCAGTTGCTTTGCGGCTTGCAGTATCTTCATTCTGCAAACATTCTTCACCGGGACTTGAAGCCCGGGAACCTCCTCGTCAATGCTAACTGCGATCTGAAGATATGCGATTTCGGGTTGGCACGAACAAGCATAGGCCGTGACCAGTTCATGACTGAGTATGTTGTTACTCGCTGGTATCGTGCACCAGAGCTTCTCCTCTGCTGTGACAACTATGGGACTTCTATTGATGTATGGTCTGTAGGATGCATCTTTGCTGAGATCCTCGGTCGGCAACCTATCTTCCCAGGGACAGAGTGCCTCAACCAACTGAACTTAATCATGAACATTCTCGGTAGTCCAAAGGAAGCGGATATCGAGTTCATCGACAATGCGAAGGCCAGAAAGTATATCAATGGCATGCCCTTTTCGAGAGGAATACACCTTTCACATCTATATCCACACGCTGAACCTTTAGCGTTAGACTTGTTGCAGAAGATGCTTGTGTTTGATCCAACGAAGAGAATTACCGTCGACGAAGCACTTCAACATCCATACATGTCAGGGCTATACGACCCGAAATTCAATCCTCCAGCCGAGGTGCCCCTCACTCTTGACATCGACGAATCACTTGGGGAGCATAAGATCAGGGAAATGATGTTGAATGAGATGCTCTATTACCATCCTGAAGCCGTTCCAGCCTATTCTTGA 1107 45.8 MATFVEPPSGIRSMGKHYYTMWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKINNVFENRTDAMRTLRELKLLRHIRHENVIALKDVMMPIHRKNFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFIYQLLCGLQYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSIGRDQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRQPIFPGTECLNQLNLIMNILGSPKEADIEFIDNAKARKYINGMPFSRGIHLSHLYPHAEPLALDLLQKMLVFDPTKRITVDEALQHPYMSGLYDPKFNPPAEVPLTLDIDESLGEHKIREMMLNEMLYYHPEAVPAYS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9406572 9409157 + Maker00029841 Lcy6g0925 635369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0925 368 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Lcy6g0925 368 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524(InterPro)
Lcy6g0925 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 357 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy6g0925 368 FunFam Mitogen-activated protein kinase 116 345 - -
Lcy6g0925 368 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0925 368 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0925 368 CDD STKc_TEY_MAPK 26 361 - -
Lcy6g0925 368 FunFam Mitogen-activated protein kinase 18 126 - -
Lcy6g0925 368 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0925 368 Gene3D Phosphorylase Kinase; domain 1 19 352 - -
Lcy6g0925 368 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Lcy6g0925 368 SMART serkin_6 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0925 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1675 Lcy-Chr13:35711936 Lcy6g0925 Lcy-Chr6:9406572 6.73E-130 dispersed
Lcy6g0925 Lcy-Chr6:9406572 Lcy7g1245 Lcy-Chr7:15588274 5.88E-107 dispersed
Lcy13g1955 Lcy-Chr13:38599649 Lcy6g0925 Lcy-Chr6:9406572 3.32E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66026 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0925 K20537 - csv:101203896 708.753