Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0938 ATGGCCGGTTTTTTCCCACTAGGCAGCGGCGGCGGCGGTAGAGGACCCAATTATCACCTTCCCACCACCACCACCACCGGCGGCGGCGAGATCATTCATCCCACCGACGGGTTATTTTGGTACAAAAATTATGATAGCTTTGAAATTTGGCAGCAGCAACAGCAGCAGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCCGGCGATGAATCGCCGCCGAGATCGTCGTTGGTGATGGTGAGATCCGGCAGAGGCGGCGGTGGGCAAGTAATGAGCTGCCAAGACTGTGGAAATCAAGCCAAGAAAGATTGCCTTCACATGCGATGTAGAACTTGCTGCAAGAGCCGTGGCTATGACTGTGAAACCCACGTCAAAAGCACTTGGGTTCCCGCCTCCAAACGCCGCGAGCGGCAGCTCCGTAGCGACAGCACTAACTCCAAACGCCCTCGAGACAACAACGCCCCTTCTTCAGGGTTAGAAATGGGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGATGCGTACGAATGACAACGTTGGACGAAACCAACGACCAATATGCTTATCAAACAGCTGTCAACATCGGAGGCCATATCTTCAAGGGAATTCTTTACGACCACGGCCCTGATCATCATCATCATCAACAACAACCACCCAACTCCGCCTCCCCCGACGGCGGAGCCCTCCTCATCACCGCCCCCTCCACCGCCGCAATCCCAACCACCGCCGAATCGCCACCCATCAGCGCCGCATTGCTTGATCCTCCTCCGCCGTACCCAACTCCTCTCAGCACCTACATCGCCGCCGGTACGCAATTTTTTCTTCCACCAACATCTTAG 846 55.44 MAGFFPLGSGGGGRGPNYHLPTTTTTGGGEIIHPTDGLFWYKNYDSFEIWQQQQQQQQQAGEGFVYSGDESPPRSSLVMVRSGRGGGGQVMSCQDCGNQAKKDCLHMRCRTCCKSRGYDCETHVKSTWVPASKRRERQLRSDSTNSKRPRDNNAPSSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPDHHHHQQQPPNSASPDGGALLITAPSTAAIPTTAESPPISAALLDPPPPYPTPLSTYIAAGTQFFLPPTS 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9560265 9561984 - Maker00029692 Lcy6g0938 635382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0938 281 Pfam Domain of unknown function (DUF702) 91 212 - -
Lcy6g0938 281 NCBIfam putative zinc finger domain, LRP1 type 92 134 IPR006510 -
Lcy6g0938 281 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 275 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Lcy6g0938 281 MobiDBLite consensus disorder prediction 1 27 - -
Lcy6g0938 281 NCBIfam LRP1 C-terminal domain 164 211 IPR006511 -
Lcy6g0938 281 MobiDBLite consensus disorder prediction 208 230 - -
Lcy6g0938 281 MobiDBLite consensus disorder prediction 131 163 - -
Lcy6g0938 281 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0938 Lcy-Chr6:9560265 Lcy8g2063 Lcy-Chr8:46835235 3.74E-38 dispersed
Lcy1g0659 Lcy-Chr1:5659488 Lcy6g0938 Lcy-Chr6:9560265 1.47E-57 wgd
Lcy13g1937 Lcy-Chr13:38393571 Lcy6g0938 Lcy-Chr6:9560265 4.61E-47 wgd
Lcy6g0938 Lcy-Chr6:9560265 Lcy9g2234 Lcy-Chr9:46902117 1.05E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20282 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0938 K27807 - csv:101216097 353.599