Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g0943 | ATGGACTTCGATCTGCAAAAGTTTCCAATTTCACCGTTTCTGTTCTTCATCGTCCCTCTACTGCTCCTTCTCTTTACTTCAGTTTTCCGGCGACGGTTCCGGCGGCGGCTGCCGCTCCCTCCGGGGCCTAAAGGGCTACCCCTCATCGGCAATATGCTGATGATTGACCAACTGACCCACCGTGGACTCGCCGCCCTGGCCAAACGTTACGGCGGAATCTTCCACCTCCGCATCGGCTTCCTTCACATGGTCACCGTTTCCGATCCCGACGTTGCTCGGAACGTTCTTCAGGTTCAAGACATCGTGTTCTCAAATCGTCCAGCAACCGAAGCCATAAGCTACTTGACTTACGACCGAGCCGACATGGCCTTCGCTCACTACGGCCCTTTCTGGCGACAAATGCGCAAGCTCTGTGTCATGAAACTATTCAGCCGCAAGCACGCTGAGTCATGGGCCTCGGTCAGAGACGAGGTCGATAATCTCGTCCAAACAGTCGCCAACAGCACTGGAACTCCTGTGAACGTCGGTGAATTAGTCTTCACAATGACGATGAATATCATTTATAGAGCGGCCTTCGGGACCATCGAACGACAAGGCCAAAGCGAATTCATAAAAATACTTCAAGAATTCTCAAAGCTTTTTGGAGCTTTCAATATTGCCGATTTTTTCCCTTATCTTGGTTGGATTGATCCTCAAGGGCTCACCGGTAGACTCGTTGAAGCTCGTCGATCGCTCAATCGATTCATCGATAGAATCATCGACGAACACTTGGAGAAAAGTAGGAAAATAGTTGACACCGACATGGTTGACGAGTTACTGGCTTTCTACAGTGAAGAAAGTAGAGAAACTGAAAGAGAAGGGGAGGATTTTCAAAGCAGCATTAAACTCACTAGAGACAACATCAAAGCCATTATCATGGACGTGATGTTCGGCGGCACAGAAACAGTGGCCTCCGCCATAGAATGGGCCATGTCGGAGCTCATGAAGAACCCCGACGACCTCAACAAACTCCAACAAGAACTCACCGCCACCGTCAGCCTTCACCGGCGGCCACAAGAATCCGATTTCGAGAACCTAACATACCTGAAATGCGCTCTCAAGGAAACTCTCCGGCTCCACCCGCCAATCCCGCTCCTCCTCCACGAGACGGCGGCGGACACGGAAGTCGCCGGCTACCGGATTCCGGCGAAGTCCCGCGTCGTCATCAACGCATGGGCCATCGGGCGGGACGAGAAGTCGTGGGTGGACCCCAACAGTTTCCGGCCGGCGAGGTTTCTGAGCGACGGCGCCGCCGACTTCAAAGGCGGAAACTTTGAGTTCATTCCGTTCGGGTCGGGTCGGCGGTCTTGCCCCGGAATGCAGCTGGGGCTTTACGCAGTGGAGATGGCGGTGGCGAATTTGGTGCATTGTTTCCGGTGGGAGTTGCCGGACGGGATGAAGCCGGGCGAGTTGGACATGAACGACGTTTATGGACTCACTGCACCCAGAGCGAGTCGACTCGTCGCTGTTCCGTACAAGAGAGTTATTTGTTCTTTAGACTGA | 1542 | 53.31 | MDFDLQKFPISPFLFFIVPLLLLLFTSVFRRRFRRRLPLPPGPKGLPLIGNMLMIDQLTHRGLAALAKRYGGIFHLRIGFLHMVTVSDPDVARNVLQVQDIVFSNRPATEAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKHAESWASVRDEVDNLVQTVANSTGTPVNVGELVFTMTMNIIYRAAFGTIERQGQSEFIKILQEFSKLFGAFNIADFFPYLGWIDPQGLTGRLVEARRSLNRFIDRIIDEHLEKSRKIVDTDMVDELLAFYSEESRETEREGEDFQSSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMSELMKNPDDLNKLQQELTATVSLHRRPQESDFENLTYLKCALKETLRLHPPIPLLLHETAADTEVAGYRIPAKSRVVINAWAIGRDEKSWVDPNSFRPARFLSDGAADFKGGNFEFIPFGSGRRSCPGMQLGLYAVEMAVANLVHCFRWELPDGMKPGELDMNDVYGLTAPRASRLVAVPYKRVICSLD | 513 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 9701182 | 9705806 | - | Maker00029962 | Lcy6g0943 | 635387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g0943 | 513 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 443 | 452 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy6g0943 | 513 | Pfam | Cytochrome P450 | 40 | 487 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | CDD | CYP71-like | 69 | 500 | - | - | |
| Lcy6g0943 | 513 | PANTHER | CYTOCHROME P450 84A1-RELATED | 16 | 512 | IPR053062 | GO:0004497(PANTHER) | |
| Lcy6g0943 | 513 | PRINTS | E-class P450 group I signature | 450 | 473 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | PRINTS | E-class P450 group I signature | 320 | 346 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | PRINTS | E-class P450 group I signature | 91 | 112 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | PRINTS | E-class P450 group I signature | 403 | 427 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | PRINTS | E-class P450 group I signature | 363 | 381 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | PRINTS | E-class P450 group I signature | 300 | 317 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | PRINTS | E-class P450 group I signature | 440 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | SUPERFAMILY | Cytochrome P450 | 31 | 507 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | FunFam | Cytochrome P450 84A1 | 32 | 506 | - | - | |
| Lcy6g0943 | 513 | PRINTS | P450 superfamily signature | 364 | 375 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | PRINTS | P450 superfamily signature | 441 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | PRINTS | P450 superfamily signature | 311 | 328 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0943 | 513 | Gene3D | Cytochrome P450 | 32 | 503 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0651 | Lcy-Chr1:5585880 | Lcy6g0943 | Lcy-Chr6:9701182 | 4.37E-272 | dispersed | |
| Lcy3g0978 | Lcy-Chr3:33547074 | Lcy6g0943 | Lcy-Chr6:9701182 | 4.13E-244 | dispersed | |
| Lcy6g0943 | Lcy-Chr6:9701182 | Lcy8g0103 | Lcy-Chr8:2370845 | 5.09E-120 | dispersed | |
| Lcy6g0943 | Lcy-Chr6:9701182 | Lcy1g0743 | Lcy-Chr1:6387256 | 1.54E-125 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy6g0943 | K09755 | - | mdm:103400991 | 743.421 |