Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0944 ATGCTTTACCGAACTCACCACCCATTTTTCTTCCCAAACAACCCCTTTACTTTCTTCTCTCTCTCTCTCTCTCTTCTTTTTCCTTCTCTTCTCTGCAACCACTCTCCAAAACCAACGTCACAACACGCCCCTCTTATCCTTTCCTCCCCGTATTCAGGCTCCTTGCCGGCCATGGAATGTCTTGATGCGGCTCTCAAAACCTGTTTCCGCAACGATATTTCCCTTCAATTGAGCCCTCAACTCTCTTTTCACGATCATACTGCCTCTTTTCATCCCCAGAATGTCGTCTCCTCTGATGATTTCTTCGTTGATGAACTCCTTGATTTCTCTAATGACGATGAGTTTGTTCAACAAGACGAGATTGCCCATGAGGATGATGATGATAAGGCCTCTGTTTCCCTTTCCATTTCGCTCTCCGCTCAAGAACAACGCCAGAACTCCGTACTTTCCGACCTTCCTTCTTTGCCCTCCGGCGCGGCGGATGATTTGGCCAACCTTGAATGGCTGTCCCATTTCGTTGAGGATTCCTTCTCTGGATTCTCCGCTCCGTTCCCCTCCGCCGGAATTTCTTCGTCCATGAAATCGTCCGCTGCGGAGGAGCAACCGGAGAACGACGGTTCCGTTTCGCCACCGGAGCCCTGTTTCAAGACGCCCGTTCCGGTCAAGGCTCGAAGCAAACGGACGAGAACCGGCGGCCGAGTTTGGTGCCTCGCTTCACCGTCGTTGACCGAGTCTTCCTCCAGTTCCACGACGTCCTCCTCTTCCTCGTCGCCGGCGGGTCCTTGGCTTATAATTTCCGACCGATTCGAACCGGAAATTCCGGTAACCAAGAAACCCAAGAGAAAATCGCCGCTGGAAAAGGCCAGAACCGTCGCCGGAGCCCAGCCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTCCGGTTCAAATCGGGTCGACTTTTACCCGAATACCGACCCGCCTGTAGCCCGACTTTCTCCAGCGAATTGCACTCCAACCATCACCGGAAAGTCCTCGAGATGCGCCGGAAAAAGGAAACCACCGCCCCCGCCGAGTTTTTGACCTCAGAAAAAGAATAA 1140 53.6 MLYRTHHPFFFPNNPFTFFSLSLSLLFPSLLCNHSPKPTSQHAPLILSSPYSGSLPAMECLDAALKTCFRNDISLQLSPQLSFHDHTASFHPQNVVSSDDFFVDELLDFSNDDEFVQQDEIAHEDDDDKASVSLSISLSAQEQRQNSVLSDLPSLPSGAADDLANLEWLSHFVEDSFSGFSAPFPSAGISSSMKSSAAEEQPENDGSVSPPEPCFKTPVPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSPAGPWLIISDRFEPEIPVTKKPKRKSPLEKARTVAGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETTAPAEFLTSEKE 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9740345 9742371 + Maker00030143 Lcy6g0944 635388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0944 379 MobiDBLite consensus disorder prediction 359 379 - -
Lcy6g0944 379 ProSiteProfiles GATA-type zinc finger domain profile. 294 330 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 SMART GATA_3 294 348 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 FunFam GATA transcription factor 290 375 - -
Lcy6g0944 379 MobiDBLite consensus disorder prediction 242 262 - -
Lcy6g0944 379 Gene3D - 292 369 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy6g0944 379 MobiDBLite consensus disorder prediction 188 226 - -
Lcy6g0944 379 PANTHER GATA TRANSCRIPTION FACTOR 91 366 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lcy6g0944 379 CDD ZnF_GATA 299 347 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 293 356 - -
Lcy6g0944 379 ProSitePatterns GATA-type zinc finger domain. 300 325 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 Pfam GATA zinc finger 300 334 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0944 379 MobiDBLite consensus disorder prediction 242 261 - -
Lcy6g0944 379 MobiDBLite consensus disorder prediction 188 203 - -
Lcy6g0944 379 MobiDBLite consensus disorder prediction 276 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0944 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0944 Lcy-Chr6:9740345 Lcy8g1171 Lcy-Chr8:38086267 9.55E-51 dispersed
Lcy11g2108 Lcy-Chr11:44535172 Lcy6g0944 Lcy-Chr6:9740345 2.17E-33 transposed
Lcy1g0710 Lcy-Chr1:6075074 Lcy6g0944 Lcy-Chr6:9740345 2.67E-08 wgd
Lcy1g0653 Lcy-Chr1:5616528 Lcy6g0944 Lcy-Chr6:9740345 5.61E-62 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1431 . 81 374 C2C2-Gata Transcription Factor Family AT5G25830 52.9 1.4e-69 260.8
Lcy6g0914 . 13 262 C2C2-Gata Transcription Factor Family AT3G50870 52.3 2.8e-37 153.3
Lcy6g0944 . 99 372 C2C2-Gata Transcription Factor Family AT3G51080 50.7 2.0e-54 210.3
Lcy1g0653 . 112 288 C2C2-Gata Transcription Factor Family AT4G36240 51.9 9.7e-41 164.5
Lcy12g1875 . 19 543 C2C2-Gata Transcription Factor Family AT4G17570 50.1 2.9e-122 436.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20284 None None None None Lcy TF