Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0946 ATGGAAGCCAATTTCGAGGAGCTGAGGCAAAGCTTCAGAAGTGGAAGAACAAGGAGTTTGGAGTGGAGAAAAAACCAGCTGATTTCCTTGATTCAGTTCATCCACGACAAAGAAAACGCCATTTTTGAAGCTCTGTACCAAGATCTCGGGAAGCATCCTGTGGAAATTTTTCGAGATGAGTGGTTTAAGGTTGGCGTTGTTCTGAAATCTGCAAATAATGCTCTGTGCTGTTTAAAGAAATGGATGGCCCCTCAAAAGAAATATGTGCCATTACTGTTCTTCCCAGCAAAAGGAGAAGTTTTGTCAGAGCCATTTGGCCTTGTCCTCATAATTTCGTCTTGGAACTTTCCACTTTCTTTGGCATTGGATCCATTAATTGGAGCGATATCGGCGGGCAACACGGCGGTCCTAAAACCGTCGGAATACGCTCCGGCTTGCTCTTCTTTGCTTGCTGCAACACTCCCTCTTTACCTTGACAATAAAGCCATCAAGGTTGTGGAGGGTGGAGCTGATGTTAGTGAACAACTTCTACAGCATAAGTGGGATAAGATCTTCTTCACTGGGAGTCCGAAAGTTGCTAGAATTGTGATGTCTGCAGCTGCAAAGCATTTAACTCCTGTTACTTTAGAGCTTGGGGGAAAATGCCCTGCAATCTTTGATTACTCCTCTGTTCATCCCAATATGAAGGTAGCAGTCAAGAGAATCGTCGGAGGAAAGTGGGGGCCGTGCTCCGGGCAGGCGTGCATAGGGATAGATTATGTTCTTGTGGAGGACAAGTTTGCTTCAGAATTGATCGAGTCGTTAAAGCGAATACTCAAGAAGTTTTATGGAGAAAACTCGAAAAACTCGGCGAGTCTGGCTCGAATTGTTAATGAGCAACATGTTGAAAGAATCAGCAATCTTCTCAAAGACCCCAAGGTTGCTGCTTCCATTGTCCATGGTGGTTCCACAGACAAACAAAAACTCTTCATTGAGCCAACAATATTGTTGAATCCTCCAATCAATGCCGATATCATGACCGAAGAAATCTTCGGTCCCCTGTTACCGATAATCACATTGAACAAAATTGAAGAAAGCATTGAGTTCATCAACTCAAGACCAAAACCTCTAGCTCTCTATGCCTTCACGGAAGATGAAACTTTCAAGAAACGGATTCTATCGGAAACGTCGTCGGGAAGTGTCACATTCAATGATACTATGGTTCAGTTTGTGTGCGATTCGCTACCATTCGGCGGTGTCGGTCAGAGCGGTTTCGGGAGTTACCATGGCAAGTATTCTTTTGATACATTCAGCCATGAAAAAGCAGTGTTGCAGAGAAGCTATTTGCTAGAACTCGAGCCACGATATCCGCCATGGAACGATTTCAAGCTCAAGTTCATTAGATTGGCGTATCGATTCGACTATTTCGGGCTGGCACTTCTCCTTTTGGGGTTAAAAAAGTAG 1443 44.21 MEANFEELRQSFRSGRTRSLEWRKNQLISLIQFIHDKENAIFEALYQDLGKHPVEIFRDEWFKVGVVLKSANNALCCLKKWMAPQKKYVPLLFFPAKGEVLSEPFGLVLIISSWNFPLSLALDPLIGAISAGNTAVLKPSEYAPACSSLLAATLPLYLDNKAIKVVEGGADVSEQLLQHKWDKIFFTGSPKVARIVMSAAAKHLTPVTLELGGKCPAIFDYSSVHPNMKVAVKRIVGGKWGPCSGQACIGIDYVLVEDKFASELIESLKRILKKFYGENSKNSASLARIVNEQHVERISNLLKDPKVAASIVHGGSTDKQKLFIEPTILLNPPINADIMTEEIFGPLLPIITLNKIEESIEFINSRPKPLALYAFTEDETFKKRILSETSSGSVTFNDTMVQFVCDSLPFGGVGQSGFGSYHGKYSFDTFSHEKAVLQRSYLLELEPRYPPWNDFKLKFIRLAYRFDYFGLALLLLGLKK 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9768399 9771118 + Maker00030122 Lcy6g0946 635390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0946 480 FunFam Aldehyde dehydrogenase 213 416 - -
Lcy6g0946 480 FunFam Aldehyde dehydrogenase 9 219 - -
Lcy6g0946 480 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 213 416 IPR016163 GO:0016620(InterPro)
Lcy6g0946 480 SUPERFAMILY ALDH-like 2 452 IPR016161 GO:0016491(InterPro)
Lcy6g0946 480 PIRSF ALDH 1 473 IPR012394 GO:0006081(InterPro)
Lcy6g0946 480 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 9 434 IPR016162 GO:0016491(InterPro)
Lcy6g0946 480 Pfam Aldehyde dehydrogenase family 6 436 IPR015590 GO:0016491(InterPro)
Lcy6g0946 480 PANTHER ALDEHYDE DEHYDROGENASE 3 476 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0946 K00128 - - csv:101221321 835.099
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0946 Lcy-Chr6:9768399 Lcy8g2098 Lcy-Chr8:47168691 6.25E-201 dispersed
Lcy6g0946 Lcy-Chr6:9768399 Lcy12g0802 Lcy-Chr12:10447106 1.92E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0806 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 7.4e-208 720.7
Lcy13g1208 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 5.2e-161 565.1
Lcy2g0648 . 66 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 7.3e-155 544.7
Lcy2g0648 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 6.4e-258 887.1
Lcy13g1208 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.6 1.4e-249 859.4
Lcy2g0806 . 18 533 Aldehyde Dehydrogenase Gene Family AT3G48000 52.2 4.9e-157 552.0
Lcy13g1208 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 78.2 5.9e-171 597.8
Lcy2g0648 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 73.4 1.4e-167 586.6
Lcy2g0806 . 18 377 Aldehyde Dehydrogenase Gene Family AT1G23800 50.6 7.1e-100 361.7
Lcy9g1554 . 8 481 Aldehyde Dehydrogenase Gene Family AT4G34240 66.0 9.7e-182 634.0
Lcy6g0946 . 6 480 Aldehyde Dehydrogenase Gene Family AT4G34240 50.3 2.3e-130 463.4
Lcy9g1554 . 69 482 Aldehyde Dehydrogenase Gene Family AT1G44170 73.4 1.1e-180 630.2
Lcy6g0946 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 4.6e-118 422.2
Lcy8g2098 . 65 481 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 2.8e-115 412.9
Lcy6g0946 . 1 481 Aldehyde Dehydrogenase Gene Family AT4G36250 63.4 6.5e-185 644.4
Lcy8g2098 . 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 7.5e-157 551.2
Lcy8g1656 . 36 740 Aldehyde Dehydrogenase Gene Family AT1G79440 53.9 9.2e-201 697.2
Lcy1g0843 . 28 515 Aldehyde Dehydrogenase Gene Family AT2G14170 62.9 5.0e-179 625.2
Lcy4g0106 . 1 248 Aldehyde Dehydrogenase Gene Family AT2G14170 71.6 7.4e-114 408.7
Lcy2g0624 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 2.4e-251 865.1
Lcy2g0624 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 4.3e-256 880.9
Lcy4g2026 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.0e-266 913.7
Lcy5g2290 . 88 625 Aldehyde Dehydrogenase Gene Family AT5G62530 78.5 2.3e-258 888.6
Lcy12g0802 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.5e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011639 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30