Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0947 ATGAACAACAACCAAGAAGCTGAAGAGCATCAACCAGTACAAATCTCTCAGTTGTACACTGGATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGACAAAACCGAGACGACGTCGTAAGAAGAACAGAGGGTCCGAGGCAGCGGCGGATGCGGTGGCGAAGAAGAGGAAGCTGACGGCGGCGCAAGTTCATCTTTTGGAGACGAATTTCGGGAGTGAACACAAGTTGGAGTCGGAGAGAAAGGACCGTTTGGCGTCGGAGCTGGGGCTGGATCCCCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTCGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACTGAGATACTGAAGCTGAAAGAACAACTTTCGGAAGTGGAGAAAGAGAAAGAGAGGCTGATAATGGCAGGACGGGCCGATGGGCCTTTAAGCAGCAGCCCAAGCCCATCAATGTCGATGGACGCCGTGGACCCCACATGCCTTGGAGAATTTGGAGTCATGGAAGAAGGATCGTTGGAAGATGTGTTTTATTACATGCCTGATAATTCTTGCATTTATGGCATGGAATGGGCTAATCCCTACATTTGA 657 49.47 MNNNQEAEEHQPVQISQLYTGLYIQMVPQQGNLGETKPRRRRKKNRGSEAAADAVAKKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLSEVEKEKERLIMAGRADGPLSSSPSPSMSMDAVDPTCLGEFGVMEEGSLEDVFYYMPDNSCIYGMEWANPYI 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9793608 9795909 + Maker00029925 Lcy6g0947 635391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0947 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 158 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lcy6g0947 218 SMART HOX_1 55 116 IPR001356 GO:0003677(InterPro)
Lcy6g0947 218 Gene3D - 49 121 - -
Lcy6g0947 218 SUPERFAMILY Homeodomain-like 57 120 IPR009057 -
Lcy6g0947 218 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677(InterPro)
Lcy6g0947 218 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677(InterPro)
Lcy6g0947 218 Pfam Homeodomain 58 111 IPR001356 GO:0003677(InterPro)
Lcy6g0947 218 CDD homeodomain 57 113 IPR001356 GO:0003677(InterPro)
Lcy6g0947 218 FunFam homeobox-leucine zipper protein ATHB-40 51 120 - -
Lcy6g0947 218 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy6g0947 218 Coils Coil 135 159 - -
Lcy6g0947 218 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677(InterPro)
Lcy6g0947 218 Coils Coil 104 131 - -
Lcy6g0947 218 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1025 Lcy-Chr4:18392494 Lcy6g0947 Lcy-Chr6:9793608 9.86E-35 dispersed
Lcy6g0947 Lcy-Chr6:9793608 Lcy6g1060 Lcy-Chr6:11539906 5.73E-20 dispersed
Lcy1g0731 Lcy-Chr1:6247139 Lcy6g0947 Lcy-Chr6:9793608 1.02E-60 transposed
Lcy6g0947 Lcy-Chr6:9793608 Lcy6g1074 Lcy-Chr6:11853768 1.24E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20285 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0947 K09338 - csv:101221080 330.872