Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0948 ATGAGAGTTCCTGTTTCCAATCATCAATCCTCCATACCCTCTTCTTCTCCAATTCAAAAGCTCAACTCTTCTCCCTCCACCATCGCCACCTTCCACACTCCCTCCACAACCACCGCCCCTCCCTCCACCCCCAATATTCCCTCTGCCTGTTACGAACCCACCTCCGTCCTCGACCTCCGCCGCAGCCCCGACCACTCCGCCCCCTCCACCGCCCTCCTCTCCTCCGACGATCATCGCTCCAACCACCCTCCGCTCGACTGGGATGAACAAGCCCTCCACAACCTCGACTGGGACTCCATCATGGGCGATTTGGGCCTTCACGACGACTCCAACTCTGCTCTCAAAAACCCAAACCCCACCAATCCCAACAATCCCGATTTCCACCCCTTCGATCAAACCCACCTCGTTTCCCCTGATTTCCTCCTCTCCGAACCCTACTCCACCCACACCCACGCCTTCAATTCCACCTTCGATTTCACCGCCAATTCCACCAACCTCGCCTTCGAATTCATCGAAGACATCGTCCGCGCCGCCGATTGCTTCGACTCCAACGATTTCCAACTCGCCCACGTGATATTGGAGCGGCTCAATCAACGCCTTCAATCCCCCTCTGGCAAGCCCCTTCAGCGTGCCGCCTTCTTCTTCAAGGAAGCTCTTCAGTCCCTCCTCTCCGGCTCCAACCGCTCCAATCGCCTCTCCTCCTGGCCTGAAATCGTCCATACCATCCGGGCTTACAAGGCCTTCTCTGCAATCTCCCCGATTCCCATGTTCTCCCACTTTACTACCAACCAGGCGCTCCTTGAGGCTCTCAACGGTTCCTCTTTCATTCATATTGTCGATTTCGATATTGGGTTTGGTGGGCAGTACGCCTCTTTCATGAAGGAGATTGCGGAGAAGGCAGAGTCCAGGAAGATGGTTCCGCCGGTTCTTCGAATTACGGCCGTCGTGCCGGAGGAATTTGCGATCGAGAGTAGGCTGATCAGGGAGAATCTCTGCCAGTTCGCTCAGGATCTCAAGATTCGCTTTCATATAGATCTCGTGCCGCTTCGGACGTTCGAGACGTTGTCGTTCAAATCGGTGAAGTTTATGGAAGGGGAGAAGGCGGCGATTCTGTTGACGCCGGCCATCTTCCGCCGTCTCGGGAGTATCAACAGCATCGGCTCTTTTCTCGCCGACGTGCGGCGGGTGTCGCCCTGCGTCGTCGTGTTCGTCGACGGCGAAGGCTGGTCGGACTCCGGCGCGGCGTCGTTCAAGAGGAATTTGGTGGATAGCCTGGAGTTTTACGCCTTGATGCTGGAGTCGCTGGACGCGGCGGTGGCCGGCGGGGAGTGGGTGCGGAGGATCGAGACCTTCGTGCTCCGGCCGAAGATATTGGCTGCAGTGGAAGGGGCGGGGAGAATGGCGGCGCCGCCGTGGAGGGAGGTGTTCCACGGTGCCGGGATGAGGCCGGTGGCGCTGAGCCAGTTCGCTGATTTTCAGGCGGAGTGCTTACTTGGCAAAGTACAGGTTCGAGGGTTCCAAGTAGGCAAACGGCATGCTGAGCTGGTGCTGTGCTGGCACGAGAGACCTCTGGTTGCCACGTCGGCGTGGAGGTGTTAG 1599 58.04 MRVPVSNHQSSIPSSSPIQKLNSSPSTIATFHTPSTTTAPPSTPNIPSACYEPTSVLDLRRSPDHSAPSTALLSSDDHRSNHPPLDWDEQALHNLDWDSIMGDLGLHDDSNSALKNPNPTNPNNPDFHPFDQTHLVSPDFLLSEPYSTHTHAFNSTFDFTANSTNLAFEFIEDIVRAADCFDSNDFQLAHVILERLNQRLQSPSGKPLQRAAFFFKEALQSLLSGSNRSNRLSSWPEIVHTIRAYKAFSAISPIPMFSHFTTNQALLEALNGSSFIHIVDFDIGFGGQYASFMKEIAEKAESRKMVPPVLRITAVVPEEFAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFETLSFKSVKFMEGEKAAILLTPAIFRRLGSINSIGSFLADVRRVSPCVVVFVDGEGWSDSGAASFKRNLVDSLEFYALMLESLDAAVAGGEWVRRIETFVLRPKILAAVEGAGRMAAPPWREVFHGAGMRPVALSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWHERPLVATSAWRC 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9798003 9799601 - Maker00029826 Lcy6g0948 635392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0948 532 MobiDBLite consensus disorder prediction 1 50 - -
Lcy6g0948 532 MobiDBLite consensus disorder prediction 1 87 - -
Lcy6g0948 532 ProSiteProfiles GRAS family profile. 161 531 IPR005202 -
Lcy6g0948 532 Pfam GRAS domain family 172 531 IPR005202 -
Lcy6g0948 532 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 154 530 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0936 Lcy-Chr13:17423307 Lcy6g0948 Lcy-Chr6:9798003 7.77E-69 dispersed
Lcy6g0948 Lcy-Chr6:9798003 Lcy6g2096 Lcy-Chr6:44570179 9.92E-73 dispersed
Lcy1g1558 Lcy-Chr1:15478667 Lcy6g0948 Lcy-Chr6:9798003 2.12E-18 transposed
Lcy1g0718 Lcy-Chr1:6147137 Lcy6g0948 Lcy-Chr6:9798003 3.10E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20286 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0948 K27747 - csv:116401665 765.377