Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0950 ATGCCAGCAGACTTAGAAAACTCCTCCACCGCCTCCGGCGAAGCCAGTATCTCCTCCAACGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTCAAGAAGAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTTATTGCTCTGTCTCCGGAGACCCTCTTGGCTACAAATCGATTCGTTTGTGAAATTTGCAACAAAGGATTTCAAAGAGATCAAAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAACGGACGAGCAAAGAGGTGAGAAAGAAGGTCTACGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCTAAGAAATACGCCGTCAAGTCCGATTGGAAGGCCCATTCAAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGCGAGACTGTGTTTTCGAGAAGAGATAGTTTCATTACTCACAGAGCCTTTTGTGATGTGTTGGCGAAGGAGGCCGCCGGAGGTCTGTCTCCGCCAGCGGCGGCGGCGGAGAATATGAATTTGGAGTCCGATCCACAAGCTCAGCCGCCGGGTAGTTCGTCTCCGCCGCCTACTGCTCCACCTCCTTCCGCCGCCGCCCCAATAGCCCCGCCTCCATCAACTGACGCGATTTCATCAATCTCTTCTATTCAGAATAAAGGTAAATATAATTAG 774 53.1 MPADLENSSTASGEASISSNGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPETLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDVLAKEAAGGLSPPAAAAENMNLESDPQAQPPGSSSPPPTAPPPSAAAPIAPPPSTDAISSISSIQNKGKYN 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9845402 9846899 - Maker00029747 Lcy6g0950 635394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0950 257 MobiDBLite consensus disorder prediction 1 26 - -
Lcy6g0950 257 Gene3D Classic Zinc Finger 41 108 - -
Lcy6g0950 257 MobiDBLite consensus disorder prediction 241 257 - -
Lcy6g0950 257 MobiDBLite consensus disorder prediction 198 257 - -
Lcy6g0950 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lcy6g0950 257 Pfam Zinc-finger of C2H2 type 61 83 IPR013087 -
Lcy6g0950 257 SMART c2h2final6 61 83 IPR013087 -
Lcy6g0950 257 SMART c2h2final6 137 157 IPR013087 -
Lcy6g0950 257 FunFam protein indeterminate-domain 12-like 40 108 - -
Lcy6g0950 257 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 194 - -
Lcy6g0950 257 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lcy6g0950 257 Gene3D Classic Zinc Finger 115 193 - -
Lcy6g0950 257 MobiDBLite consensus disorder prediction 216 236 - -
Lcy6g0950 257 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 229 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy6g0950 257 MobiDBLite consensus disorder prediction 1 45 - -
Lcy6g0950 257 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Lcy6g0950 257 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Lcy6g0950 257 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Lcy6g0950 257 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0950 Lcy-Chr6:9845402 Lcy9g2183 Lcy-Chr9:46486329 3.32E-108 dispersed
Lcy4g2166 Lcy-Chr4:48231451 Lcy6g0950 Lcy-Chr6:9845402 2.22E-25 transposed
Lcy1g0725 Lcy-Chr1:6207818 Lcy6g0950 Lcy-Chr6:9845402 7.53E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20287 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0950 K25869 - csv:101215476 379.022