Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g0958 | ATGGAGAAGGAGATGAGAGAGAATGAGCATGGGGAGGATGAAATTGTTGGCTACGGAGAGATTTGGGGAGGAGAGAGAGATTTGTGGGGAATGGACGTTTTAGAGAGAGAAAATATGGGGGAAGAAGATGGTGATTTGAGAGAGATGAGTTCAATATTTGATGAGACTGCTCCGGGGCCGGACATCGCCCTATCTTCACCCGCTGCTCCACCGCCGGATGAGTCGTCGTCGTCGTCACCGCCGTCTCCCAATGCCGATGCCGATTACTCTCCACCACCATCGCCAAAAAATGATGATGAATCCAATTCCTCACGATCTCCATCAGAAGAATCTCCACCACCAAAGTCGTCGCGGTCGAGTGGCTCTTCCGATGATAACAAATCCCGTTCATCTCCAAAAGCGAGCAGTCCACGTTCACCGTCGATCGTTTCTGAATCTCCTCCATCTCGATCTTCATCACCTGCAGATGCATTGCCTCCACCAGATTCGACCGAAGGAAAGGCATCACCGAAATCGTCGGGAGGCGCAAAACATCAAGGATCGTCATCGGAGGCCGATTCACCGTCGTCGGATGTCAATGCAGGAGTTATAATTGGGGTGGCATTGGGGGTGGGAGTACTCATAATTGCTCTCATATCAGTAATTGCATTGTGTACGAGGAAGAAGAAGAGGAAGGGAGATCCTATGCAATATTATGGAGATCATGGTGGTGACTATTACAACAGTTCACAACAACAAAACTGGCACAACGGCATGCACGGCCCCGGTCCCGGTCCTGGGACGGATCAATTCGGGAGGCCACCGGTATCGGGGTCGCCGCCAGGGAGCGGGTGGCCGATGAATAGCGAGAACATGACGACGAGCAGCAGCTACACGGGTGGCCCTCCTCTTCCTCCGCCATCACCATCGATTGCCTTTGGGTTCAACAAGAGCACATTCACGTACGATGAGCTCGCAGCGGCAACTGCCGGGTTTGCGCACGGGAACCTGCTCGGGCAGGGCGGGTTCGGGTACGTGCACAAGGGGGTGCTGCCGAACGGGAAGGAGGTCGCGGTGAAGAGCCTGAAGTCGGGCAGTGGGCAGGGGGAGAGGGAGTTCATGGCTGAGGTTGAGATTATTAGTAGAGTCCACCACCGGCATTTGGTGTCCTTGGTTGGCTTTTGCATTGCCGGTGGACAAAGAATGTTGGTCTATGAGTTTGTCCCTAACAACACCTTGGAGCATCACCTTCATGGTAAAGGTCTCCCAGTAATGAATTGGCCAACTAGACTTCGTATTGCTATCGGTTCTGCCAAGGGTCTTGCTTACCTTCACGAAGATTGTCATCCAAAGATTATTCATCGAGATATCAAGTCGGCTAATATTCTGATTGATGCCAACTTTGAAGCAATGGTGGCAGATTTTGGATTGGCTAAACTATCTTCCGATAATCACACTCACGTCTCCACTAGGGTTATGGGTACATTTGGGTACCTGGCACCAGAATATGCATCAAGTGGGAAGTTGACAGAGAAGTCCGATGTGTTCTCATTTGGTGTAATGTTATTGGAACTCATCACTGGAAAACGACCCGTTGATCCCACTCACACCATGGAGGATAGCTTAGTCGACTGGGCTCGACCACTTATGAGTCGGGCATTGATGGAAGGCATCTACGAAGAGTTGGTGGATATACGGTTAGATAACGAGTTCAACACTCAGGAGATGGCTCGTATGGTAGCTTGTGCTGCTGCCTCCATCCGTCACTCGGCTAGAAAACGCCCCAAAATGAGTCAGGTAGTACGAGCTTTAGAAGGAGATGTATCATTGGATGATCTGAACGAAGGGATAAGACCAGGACAAAGCTCCATTTACAGTGGGACGAGCTCGGAGTACGACACGGGTGCGTACCATGCCGACATGTCGAAATTCAGGAAGTTAGCTTTGTCGGACGACAGCAGCGAGCTCGGAACTTCTAGCAATGACTCGAGAGAGATGAACCATCCTGGAGCCCAAAGGCCACTCTTTTGA | 2010 | 51.14 | MEKEMRENEHGEDEIVGYGEIWGGERDLWGMDVLERENMGEEDGDLREMSSIFDETAPGPDIALSSPAAPPPDESSSSSPPSPNADADYSPPPSPKNDDESNSSRSPSEESPPPKSSRSSGSSDDNKSRSSPKASSPRSPSIVSESPPSRSSSPADALPPPDSTEGKASPKSSGGAKHQGSSSEADSPSSDVNAGVIIGVALGVGVLIIALISVIALCTRKKKRKGDPMQYYGDHGGDYYNSSQQQNWHNGMHGPGPGPGTDQFGRPPVSGSPPGSGWPMNSENMTTSSSYTGGPPLPPPSPSIAFGFNKSTFTYDELAAATAGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHGKGLPVMNWPTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSSDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTHTMEDSLVDWARPLMSRALMEGIYEELVDIRLDNEFNTQEMARMVACAAASIRHSARKRPKMSQVVRALEGDVSLDDLNEGIRPGQSSIYSGTSSEYDTGAYHADMSKFRKLALSDDSSELGTSSNDSREMNHPGAQRPLF | 669 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9927952 | 9935512 | + | Maker00030096 | Lcy6g0958 | 635402 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g0958 | 669 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 401 | 608 | - | - | |
Lcy6g0958 | 669 | Gene3D | Transferase(Phosphotransferase) domain 1 | 401 | 608 | - | - | |
Lcy6g0958 | 669 | MobiDBLite | consensus disorder prediction | 237 | 251 | - | - | |
Lcy6g0958 | 669 | MobiDBLite | consensus disorder prediction | 275 | 292 | - | - | |
Lcy6g0958 | 669 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 163 | 639 | IPR047117 | - | |
Lcy6g0958 | 669 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 445 | 457 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy6g0958 | 669 | MobiDBLite | consensus disorder prediction | 33 | 191 | - | - | |
Lcy6g0958 | 669 | CDD | STKc_IRAK | 331 | 599 | - | - | |
Lcy6g0958 | 669 | MobiDBLite | consensus disorder prediction | 33 | 50 | - | - | |
Lcy6g0958 | 669 | MobiDBLite | consensus disorder prediction | 643 | 669 | - | - | |
Lcy6g0958 | 669 | ProSitePatterns | Protein kinases ATP-binding region signature. | 331 | 353 | IPR017441 | GO:0005524(InterPro) | |
Lcy6g0958 | 669 | SUPERFAMILY | Protein kinase-like (PK-like) | 299 | 597 | IPR011009 | - | |
Lcy6g0958 | 669 | Gene3D | Phosphorylase Kinase; domain 1 | 301 | 400 | - | - | |
Lcy6g0958 | 669 | SMART | serkin_6 | 325 | 586 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g0958 | 669 | MobiDBLite | consensus disorder prediction | 95 | 158 | - | - | |
Lcy6g0958 | 669 | FunFam | proline-rich receptor-like protein kinase PERK1 | 303 | 400 | - | - | |
Lcy6g0958 | 669 | MobiDBLite | consensus disorder prediction | 645 | 660 | - | - | |
Lcy6g0958 | 669 | MobiDBLite | consensus disorder prediction | 166 | 190 | - | - | |
Lcy6g0958 | 669 | ProSiteProfiles | Protein kinase domain profile. | 325 | 603 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g0958 | 669 | MobiDBLite | consensus disorder prediction | 236 | 298 | - | - | |
Lcy6g0958 | 669 | Pfam | Protein tyrosine and serine/threonine kinase | 329 | 595 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0819 | Lcy-Chr2:7416777 | Lcy6g0958 | Lcy-Chr6:9927952 | 1.94E-180 | dispersed | |
Lcy4g2167 | Lcy-Chr4:48245933 | Lcy6g0958 | Lcy-Chr6:9927952 | 2.68E-162 | dispersed | |
Lcy6g0958 | Lcy-Chr6:9927952 | Lcy8g1105 | Lcy-Chr8:37163932 | 1.68E-174 | dispersed | |
Lcy2g0176 | Lcy-Chr2:1416669 | Lcy6g0958 | Lcy-Chr6:9927952 | 8.46E-35 | transposed | |
Lcy1g0730 | Lcy-Chr1:6240136 | Lcy6g0958 | Lcy-Chr6:9927952 | 1.21E-12 | wgd | |
Lcy6g0958 | Lcy-Chr6:9927952 | Lcy6g1083 | Lcy-Chr6:12087105 | 3.04E-54 | wgd | |
Lcy6g0958 | Lcy-Chr6:9927952 | Lcy8g1724 | Lcy-Chr8:43763056 | 1.84E-28 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66027 | None | None | None | None | Lcy | PK |
Pathway information
