Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0958 ATGGAGAAGGAGATGAGAGAGAATGAGCATGGGGAGGATGAAATTGTTGGCTACGGAGAGATTTGGGGAGGAGAGAGAGATTTGTGGGGAATGGACGTTTTAGAGAGAGAAAATATGGGGGAAGAAGATGGTGATTTGAGAGAGATGAGTTCAATATTTGATGAGACTGCTCCGGGGCCGGACATCGCCCTATCTTCACCCGCTGCTCCACCGCCGGATGAGTCGTCGTCGTCGTCACCGCCGTCTCCCAATGCCGATGCCGATTACTCTCCACCACCATCGCCAAAAAATGATGATGAATCCAATTCCTCACGATCTCCATCAGAAGAATCTCCACCACCAAAGTCGTCGCGGTCGAGTGGCTCTTCCGATGATAACAAATCCCGTTCATCTCCAAAAGCGAGCAGTCCACGTTCACCGTCGATCGTTTCTGAATCTCCTCCATCTCGATCTTCATCACCTGCAGATGCATTGCCTCCACCAGATTCGACCGAAGGAAAGGCATCACCGAAATCGTCGGGAGGCGCAAAACATCAAGGATCGTCATCGGAGGCCGATTCACCGTCGTCGGATGTCAATGCAGGAGTTATAATTGGGGTGGCATTGGGGGTGGGAGTACTCATAATTGCTCTCATATCAGTAATTGCATTGTGTACGAGGAAGAAGAAGAGGAAGGGAGATCCTATGCAATATTATGGAGATCATGGTGGTGACTATTACAACAGTTCACAACAACAAAACTGGCACAACGGCATGCACGGCCCCGGTCCCGGTCCTGGGACGGATCAATTCGGGAGGCCACCGGTATCGGGGTCGCCGCCAGGGAGCGGGTGGCCGATGAATAGCGAGAACATGACGACGAGCAGCAGCTACACGGGTGGCCCTCCTCTTCCTCCGCCATCACCATCGATTGCCTTTGGGTTCAACAAGAGCACATTCACGTACGATGAGCTCGCAGCGGCAACTGCCGGGTTTGCGCACGGGAACCTGCTCGGGCAGGGCGGGTTCGGGTACGTGCACAAGGGGGTGCTGCCGAACGGGAAGGAGGTCGCGGTGAAGAGCCTGAAGTCGGGCAGTGGGCAGGGGGAGAGGGAGTTCATGGCTGAGGTTGAGATTATTAGTAGAGTCCACCACCGGCATTTGGTGTCCTTGGTTGGCTTTTGCATTGCCGGTGGACAAAGAATGTTGGTCTATGAGTTTGTCCCTAACAACACCTTGGAGCATCACCTTCATGGTAAAGGTCTCCCAGTAATGAATTGGCCAACTAGACTTCGTATTGCTATCGGTTCTGCCAAGGGTCTTGCTTACCTTCACGAAGATTGTCATCCAAAGATTATTCATCGAGATATCAAGTCGGCTAATATTCTGATTGATGCCAACTTTGAAGCAATGGTGGCAGATTTTGGATTGGCTAAACTATCTTCCGATAATCACACTCACGTCTCCACTAGGGTTATGGGTACATTTGGGTACCTGGCACCAGAATATGCATCAAGTGGGAAGTTGACAGAGAAGTCCGATGTGTTCTCATTTGGTGTAATGTTATTGGAACTCATCACTGGAAAACGACCCGTTGATCCCACTCACACCATGGAGGATAGCTTAGTCGACTGGGCTCGACCACTTATGAGTCGGGCATTGATGGAAGGCATCTACGAAGAGTTGGTGGATATACGGTTAGATAACGAGTTCAACACTCAGGAGATGGCTCGTATGGTAGCTTGTGCTGCTGCCTCCATCCGTCACTCGGCTAGAAAACGCCCCAAAATGAGTCAGGTAGTACGAGCTTTAGAAGGAGATGTATCATTGGATGATCTGAACGAAGGGATAAGACCAGGACAAAGCTCCATTTACAGTGGGACGAGCTCGGAGTACGACACGGGTGCGTACCATGCCGACATGTCGAAATTCAGGAAGTTAGCTTTGTCGGACGACAGCAGCGAGCTCGGAACTTCTAGCAATGACTCGAGAGAGATGAACCATCCTGGAGCCCAAAGGCCACTCTTTTGA 2010 51.14 MEKEMRENEHGEDEIVGYGEIWGGERDLWGMDVLERENMGEEDGDLREMSSIFDETAPGPDIALSSPAAPPPDESSSSSPPSPNADADYSPPPSPKNDDESNSSRSPSEESPPPKSSRSSGSSDDNKSRSSPKASSPRSPSIVSESPPSRSSSPADALPPPDSTEGKASPKSSGGAKHQGSSSEADSPSSDVNAGVIIGVALGVGVLIIALISVIALCTRKKKRKGDPMQYYGDHGGDYYNSSQQQNWHNGMHGPGPGPGTDQFGRPPVSGSPPGSGWPMNSENMTTSSSYTGGPPLPPPSPSIAFGFNKSTFTYDELAAATAGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHGKGLPVMNWPTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSSDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTHTMEDSLVDWARPLMSRALMEGIYEELVDIRLDNEFNTQEMARMVACAAASIRHSARKRPKMSQVVRALEGDVSLDDLNEGIRPGQSSIYSGTSSEYDTGAYHADMSKFRKLALSDDSSELGTSSNDSREMNHPGAQRPLF 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9927952 9935512 + Maker00030096 Lcy6g0958 635402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0958 669 FunFam Proline-rich receptor-like protein kinase PERK1 401 608 - -
Lcy6g0958 669 Gene3D Transferase(Phosphotransferase) domain 1 401 608 - -
Lcy6g0958 669 MobiDBLite consensus disorder prediction 237 251 - -
Lcy6g0958 669 MobiDBLite consensus disorder prediction 275 292 - -
Lcy6g0958 669 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 163 639 IPR047117 -
Lcy6g0958 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0958 669 MobiDBLite consensus disorder prediction 33 191 - -
Lcy6g0958 669 CDD STKc_IRAK 331 599 - -
Lcy6g0958 669 MobiDBLite consensus disorder prediction 33 50 - -
Lcy6g0958 669 MobiDBLite consensus disorder prediction 643 669 - -
Lcy6g0958 669 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524(InterPro)
Lcy6g0958 669 SUPERFAMILY Protein kinase-like (PK-like) 299 597 IPR011009 -
Lcy6g0958 669 Gene3D Phosphorylase Kinase; domain 1 301 400 - -
Lcy6g0958 669 SMART serkin_6 325 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0958 669 MobiDBLite consensus disorder prediction 95 158 - -
Lcy6g0958 669 FunFam proline-rich receptor-like protein kinase PERK1 303 400 - -
Lcy6g0958 669 MobiDBLite consensus disorder prediction 645 660 - -
Lcy6g0958 669 MobiDBLite consensus disorder prediction 166 190 - -
Lcy6g0958 669 ProSiteProfiles Protein kinase domain profile. 325 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0958 669 MobiDBLite consensus disorder prediction 236 298 - -
Lcy6g0958 669 Pfam Protein tyrosine and serine/threonine kinase 329 595 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0819 Lcy-Chr2:7416777 Lcy6g0958 Lcy-Chr6:9927952 1.94E-180 dispersed
Lcy4g2167 Lcy-Chr4:48245933 Lcy6g0958 Lcy-Chr6:9927952 2.68E-162 dispersed
Lcy6g0958 Lcy-Chr6:9927952 Lcy8g1105 Lcy-Chr8:37163932 1.68E-174 dispersed
Lcy2g0176 Lcy-Chr2:1416669 Lcy6g0958 Lcy-Chr6:9927952 8.46E-35 transposed
Lcy1g0730 Lcy-Chr1:6240136 Lcy6g0958 Lcy-Chr6:9927952 1.21E-12 wgd
Lcy6g0958 Lcy-Chr6:9927952 Lcy6g1083 Lcy-Chr6:12087105 3.04E-54 wgd
Lcy6g0958 Lcy-Chr6:9927952 Lcy8g1724 Lcy-Chr8:43763056 1.84E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66027 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0958 - - - 0.0