Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0960 ATGTTTCATCCAGTCCTCATACTCTGTTTTCTCCCCTCTGTTTTAGCGTTATTCCTCTTCCTGATTCTGCTCAGAAGGAAGAGAAATGTCGTCGATCTTCCGCCTGGAAACATGGGCTGGCCCTTTCTCGGCGAGACCGTCGGCTATCTCCGGCCCTACTCCGCCACCACCATCGGAGATTTCATGGAGAATCACATCAAGAGATATGGCAAAGTGTACAAGTCGAACCTGTTCGGAGAGCCGACGGTGGTGTCGGCCGACGCCGGACTCAACCGGTACATACTGCAGAACGAAGGACGGCTGTTTGAATGTAGCTACCCGAAGAGCATCGGCGGGATTCTCGGGAAATGGTCGATGCTGGTTACCGTCGGCGACATGCACCGGGATATGAGAATGATATCTCTGAACTTTTTGAGCCAGAGTAGGCTCAAGACTCATCTCTTGAAGGAGGTTGAGAACCAGACTCTGCTCGTCCTCCGTTCTTGGAAAGATTCCTCCACGTTTTTGGCGCAGGACGAGGCCAAAAAGGTACGGATAACGGATTTTGATTCGTTCACTTTCAATTTAATGGCGAAACACATCATGAGTTTGGATCCGTGGAAGTTGGAGACGGAGATGTTGAAGAAGGAGTATGTGACTTTCATGAAGGGAGTGATTTCTCCGCCGCTGAATCTGCCAGGAACGCCGTACAGAAGAGCTTTGAAGTCTCGCTCGACGATCTTGAAGTTCATCGAACAGAAAATGGAGGAACGGAAGTTGAAAATCGAAGCCGACGGCGGAGATTTCCAGGATGATGATCTACTCGGCTGGGCATTGAAGCACTCAAATCTCTCGACAGAGCAAATCCTCGACCTGATTCTAAGCTTGCTGTTCGCCGGCCACGAGACGTCGTCCGTCGCCATAGCTCTGGCCATCTTCTTCCTCTCCAGCAGCCCGGCCGCCGTCCAACAGTTGACGGAAGAACACCTGGAGATCGCCAGAGCCAACAAACGATTGGGAAAGACGGAATTGGATTGGGAAGATTACAAGAAAATGGAATTCACGCAATGTGTGATTAACGAGACGCTTCGGCTTGGAAACGTGGTGAGATTTCTTCACAGAAAGGCACTGAAGGATGTACGGTACAGAGGTTACTTCATTCCACGTGGATGGAAAGTGCTTCCTGTGATTTCTGCTGAGCATTTGGATTCTTTAGTTTTTGACCAACCTCACAACTTTAATCCATGGAGGTGGCAGCAAATGAATGGATCGCCATTGGGTAGCACGAGCACGACGATAACCAATAATTTCATGCCATTTGGCGGAGGACCGCGACTATGCACTGGTTCAGAACTGGCCAAGCTTGAAATGGCCATTTTTATTCATCATTTGGTCATGAATTACCAATGGGAGTTGGTGGGTTCAGATCAAGCTTTTGCTTACCCTTTTGTTGACTTTCCTAAAGGTCTGCCAATTAGAGTCCGCCACCACACTCTTGTGTAA 1482 49.19 MFHPVLILCFLPSVLALFLFLILLRRKRNVVDLPPGNMGWPFLGETVGYLRPYSATTIGDFMENHIKRYGKVYKSNLFGEPTVVSADAGLNRYILQNEGRLFECSYPKSIGGILGKWSMLVTVGDMHRDMRMISLNFLSQSRLKTHLLKEVENQTLLVLRSWKDSSTFLAQDEAKKVRITDFDSFTFNLMAKHIMSLDPWKLETEMLKKEYVTFMKGVISPPLNLPGTPYRRALKSRSTILKFIEQKMEERKLKIEADGGDFQDDDLLGWALKHSNLSTEQILDLILSLLFAGHETSSVAIALAIFFLSSSPAAVQQLTEEHLEIARANKRLGKTELDWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYRGYFIPRGWKVLPVISAEHLDSLVFDQPHNFNPWRWQQMNGSPLGSTSTTITNNFMPFGGGPRLCTGSELAKLEMAIFIHHLVMNYQWELVGSDQAFAYPFVDFPKGLPIRVRHHTLV 493
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 9974545 9979388 - Maker00029861 Lcy6g0960 635404
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0960 493 SUPERFAMILY Cytochrome P450 29 488 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS P450 superfamily signature 292 309 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS E-class P450 group I signature 281 298 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 CDD CYP90-like 65 487 - -
Lcy6g0960 493 PANTHER CYTOCHROME P450 26 32 466 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Lcy6g0960 493 Gene3D Cytochrome P450 24 488 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g0960 493 FunFam Cytochrome P450 90B1 23 489 - -
Lcy6g0960 493 Pfam Cytochrome P450 34 466 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0941 Lcy-Chr12:14415155 Lcy6g0960 Lcy-Chr6:9974545 4.57E-77 dispersed
Lcy4g1713 Lcy-Chr4:42994106 Lcy6g0960 Lcy-Chr6:9974545 1.85E-52 dispersed
Lcy6g0960 Lcy-Chr6:9974545 Lcy6g1968 Lcy-Chr6:41800985 9.76E-91 dispersed
Lcy6g0960 Lcy-Chr6:9974545 Lcy7g0979 Lcy-Chr7:10142468 4.81E-119 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0960 K09587 - csv:101211854 889.026