Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g0960 | ATGTTTCATCCAGTCCTCATACTCTGTTTTCTCCCCTCTGTTTTAGCGTTATTCCTCTTCCTGATTCTGCTCAGAAGGAAGAGAAATGTCGTCGATCTTCCGCCTGGAAACATGGGCTGGCCCTTTCTCGGCGAGACCGTCGGCTATCTCCGGCCCTACTCCGCCACCACCATCGGAGATTTCATGGAGAATCACATCAAGAGATATGGCAAAGTGTACAAGTCGAACCTGTTCGGAGAGCCGACGGTGGTGTCGGCCGACGCCGGACTCAACCGGTACATACTGCAGAACGAAGGACGGCTGTTTGAATGTAGCTACCCGAAGAGCATCGGCGGGATTCTCGGGAAATGGTCGATGCTGGTTACCGTCGGCGACATGCACCGGGATATGAGAATGATATCTCTGAACTTTTTGAGCCAGAGTAGGCTCAAGACTCATCTCTTGAAGGAGGTTGAGAACCAGACTCTGCTCGTCCTCCGTTCTTGGAAAGATTCCTCCACGTTTTTGGCGCAGGACGAGGCCAAAAAGGTACGGATAACGGATTTTGATTCGTTCACTTTCAATTTAATGGCGAAACACATCATGAGTTTGGATCCGTGGAAGTTGGAGACGGAGATGTTGAAGAAGGAGTATGTGACTTTCATGAAGGGAGTGATTTCTCCGCCGCTGAATCTGCCAGGAACGCCGTACAGAAGAGCTTTGAAGTCTCGCTCGACGATCTTGAAGTTCATCGAACAGAAAATGGAGGAACGGAAGTTGAAAATCGAAGCCGACGGCGGAGATTTCCAGGATGATGATCTACTCGGCTGGGCATTGAAGCACTCAAATCTCTCGACAGAGCAAATCCTCGACCTGATTCTAAGCTTGCTGTTCGCCGGCCACGAGACGTCGTCCGTCGCCATAGCTCTGGCCATCTTCTTCCTCTCCAGCAGCCCGGCCGCCGTCCAACAGTTGACGGAAGAACACCTGGAGATCGCCAGAGCCAACAAACGATTGGGAAAGACGGAATTGGATTGGGAAGATTACAAGAAAATGGAATTCACGCAATGTGTGATTAACGAGACGCTTCGGCTTGGAAACGTGGTGAGATTTCTTCACAGAAAGGCACTGAAGGATGTACGGTACAGAGGTTACTTCATTCCACGTGGATGGAAAGTGCTTCCTGTGATTTCTGCTGAGCATTTGGATTCTTTAGTTTTTGACCAACCTCACAACTTTAATCCATGGAGGTGGCAGCAAATGAATGGATCGCCATTGGGTAGCACGAGCACGACGATAACCAATAATTTCATGCCATTTGGCGGAGGACCGCGACTATGCACTGGTTCAGAACTGGCCAAGCTTGAAATGGCCATTTTTATTCATCATTTGGTCATGAATTACCAATGGGAGTTGGTGGGTTCAGATCAAGCTTTTGCTTACCCTTTTGTTGACTTTCCTAAAGGTCTGCCAATTAGAGTCCGCCACCACACTCTTGTGTAA | 1482 | 49.19 | MFHPVLILCFLPSVLALFLFLILLRRKRNVVDLPPGNMGWPFLGETVGYLRPYSATTIGDFMENHIKRYGKVYKSNLFGEPTVVSADAGLNRYILQNEGRLFECSYPKSIGGILGKWSMLVTVGDMHRDMRMISLNFLSQSRLKTHLLKEVENQTLLVLRSWKDSSTFLAQDEAKKVRITDFDSFTFNLMAKHIMSLDPWKLETEMLKKEYVTFMKGVISPPLNLPGTPYRRALKSRSTILKFIEQKMEERKLKIEADGGDFQDDDLLGWALKHSNLSTEQILDLILSLLFAGHETSSVAIALAIFFLSSSPAAVQQLTEEHLEIARANKRLGKTELDWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYRGYFIPRGWKVLPVISAEHLDSLVFDQPHNFNPWRWQQMNGSPLGSTSTTITNNFMPFGGGPRLCTGSELAKLEMAIFIHHLVMNYQWELVGSDQAFAYPFVDFPKGLPIRVRHHTLV | 493 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 9974545 | 9979388 | - | Maker00029861 | Lcy6g0960 | 635404 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g0960 | 493 | SUPERFAMILY | Cytochrome P450 | 29 | 488 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | P450 superfamily signature | 350 | 361 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | P450 superfamily signature | 431 | 440 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | P450 superfamily signature | 292 | 309 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | P450 superfamily signature | 440 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | E-class P450 group I signature | 66 | 85 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | E-class P450 group I signature | 389 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | E-class P450 group I signature | 281 | 298 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | E-class P450 group I signature | 349 | 367 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | E-class P450 group I signature | 430 | 440 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | PRINTS | E-class P450 group I signature | 440 | 463 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | CDD | CYP90-like | 65 | 487 | - | - | |
| Lcy6g0960 | 493 | PANTHER | CYTOCHROME P450 26 | 32 | 466 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Lcy6g0960 | 493 | Gene3D | Cytochrome P450 | 24 | 488 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0960 | 493 | FunFam | Cytochrome P450 90B1 | 23 | 489 | - | - | |
| Lcy6g0960 | 493 | Pfam | Cytochrome P450 | 34 | 466 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g0941 | Lcy-Chr12:14415155 | Lcy6g0960 | Lcy-Chr6:9974545 | 4.57E-77 | dispersed | |
| Lcy4g1713 | Lcy-Chr4:42994106 | Lcy6g0960 | Lcy-Chr6:9974545 | 1.85E-52 | dispersed | |
| Lcy6g0960 | Lcy-Chr6:9974545 | Lcy6g1968 | Lcy-Chr6:41800985 | 9.76E-91 | dispersed | |
| Lcy6g0960 | Lcy-Chr6:9974545 | Lcy7g0979 | Lcy-Chr7:10142468 | 4.81E-119 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy6g0960 | K09587 | - | csv:101211854 | 889.026 |