Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0974 ATGTGGGTGTGGGGGCTTGGCGTTGGGAAGTTCGGTGAAATCGCCTCACGTTTTGGAGGGAGGAGCGGCGGAGATGAAGAAACGGCTGAATGGGGCTTTGGTCTTGCTCTGGTTCATCTTTGTGGGGCAACTGTGTGCCAATGTCTCTGCAACTGTAGAAGCGACCTTGGAAATGCTGGATTGTCTGGTAAATTAGTACCAGAGCTTGGTCAACTTAAAAGTCTTCAATACTTAGAGCTTTATGGTAACAACATAAGTGGAGATATTCCAGATGATCTTGGGAATCTGGAAAACTTGGTGAGCCTAGACCTTTACTTGAACGGTTTAACTGGCCCAATTCCAGACACGTTTGGCAAGCTCACACAATTGCGTTTCCTGGATCTATCAAACAACCTTTTATCTGGAAAGGTTCCAAATAATGGATCATTTTCACTATTTACTCCCATCAGTTTCGCAAATAACTTGGATCTATGCGGTTTGGTAACTGGGAAACCCTGCCCTGGGGATCCTCCTTTTTCTCCACCACCACCATATGTTCCGCAGCCAACATTTTCTTCCCATGAACTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTTGCTGCGGGTGCTGCTTTACTTTTTGCCACTCCAGCTATCATATTCGTCTATTGGCATCGGAGGAGATCACGAGAAATATTCTTTGATGTGCCTGCGGAAGAAGATTCAGAGATCAACTTGGGGCAGCTGAAAAGGTTTTCTCTAAGAGACTTGCAAGTTGCAACAGATAACTTCAGCAACAAAAATATTCTTGGTCGAGGTGGATTTGGTAAAGTGTACAGGGGACGCTTGGCTGATGGCTCATTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGTGGAGAGTTGCAGTTCCAGACAGAAGTAGAGATGATTAGCATGGCTGTGCATCGGAATCTTTTGCGACTACAAGGATTTTGTACAACAACAACTGAACGCCTCCTTGTTTATCCTTATATGGCTAACGGAAGTGTTGCATCATGTTTAAGAGAACGTCCACAATCCGAAGCTCCTCTCGACTGGCCAACTCGGAAGAAAGTTGCATTAGGCTCTGCAAGGGGCCTTTCTTATTTACATGATGGATGCGATCCGAAAATCATCCATCGTGATGTGAAAGCTGCAAATATTTTACTGGACGAGGAGTTCGAGGCTGTCGTCGGCGATTTTGGTCTTGCAAAATTAATGGACTACAAGGATACCCACGTTACAACAGCAGTAAGAGGTACCATTGGGCATATAGCTCCGGAGTATCTCTCAACTGGGAAGTCATCTGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTCTTGGAGCTCATAACCGGACAGAGGGCTTTCGATCTTGCTCGACTTGCGAACGATGAAGATGTTATGCTGCTTGATTGGGTCAAAGGCCTTCTGAAAGAGAAAAAGTTGGAGATGTTGGTTGACCCTGATCTGAAGGACAATTATGATGAAGTTGAAGTTGAGCAAATAATCCAAGTAGCACTTCTCTGCACACAGAGCTCTCCCATGGAACGACCGAAAATGTCCGATGTGGTCAGAATGCTCGAAGGAGATGGCTTGACTGAACGATGGGAGGAATGGCAGAGAGTCGAGGTAGTATACCACGAAGCTGAATTGGCATCTTCTCAAACTTCTGAATGGATGGTCGATTCGACCGAAAACGTTCGTGCTTTTGAATTATCCGGTCCTAGGTAA 1746 45.3 MWVWGLGVGKFGEIASRFGGRSGGDEETAEWGFGLALVHLCGATVCQCLCNCRSDLGNAGLSGKLVPELGQLKSLQYLELYGNNISGDIPDDLGNLENLVSLDLYLNGLTGPIPDTFGKLTQLRFLDLSNNLLSGKVPNNGSFSLFTPISFANNLDLCGLVTGKPCPGDPPFSPPPPYVPQPTFSSHELNNPNGAIVGGVAAGAALLFATPAIIFVYWHRRRSREIFFDVPAEEDSEINLGQLKRFSLRDLQVATDNFSNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLQGFCTTTTERLLVYPYMANGSVASCLRERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLEMLVDPDLKDNYDEVEVEQIIQVALLCTQSSPMERPKMSDVVRMLEGDGLTERWEEWQRVEVVYHEAELASSQTSEWMVDSTENVRAFELSGPR 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10234575 10239448 + Maker00029873 Lcy6g0974 635418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0974 581 Pfam Protein tyrosine and serine/threonine kinase 261 532 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0974 581 ProSitePatterns Protein kinases ATP-binding region signature. 264 286 IPR017441 GO:0005524(InterPro)
Lcy6g0974 581 FunFam Somatic embryogenesis receptor-like kinase 1 335 552 - -
Lcy6g0974 581 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 54 153 - -
Lcy6g0974 581 SUPERFAMILY L domain-like 55 143 - -
Lcy6g0974 581 Gene3D Phosphorylase Kinase; domain 1 227 334 - -
Lcy6g0974 581 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 52 581 - -
Lcy6g0974 581 Pfam Leucine rich repeat 74 133 IPR001611 GO:0005515(InterPro)
Lcy6g0974 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0974 581 ProSiteProfiles Protein kinase domain profile. 258 545 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0974 581 Gene3D Transferase(Phosphotransferase) domain 1 335 552 - -
Lcy6g0974 581 SMART serkin_6 258 532 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0974 581 FunFam Somatic embryogenesis receptor kinase 1 227 334 - -
Lcy6g0974 581 SUPERFAMILY Protein kinase-like (PK-like) 238 533 IPR011009 -
Lcy6g0974 581 Gene3D Ribonuclease Inhibitor 39 171 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0353 Lcy-Chr6:3272780 Lcy6g0974 Lcy-Chr6:10234575 3.73E-202 dispersed
Lcy6g0974 Lcy-Chr6:10234575 Lcy7g0388 Lcy-Chr7:3288478 1.49E-162 dispersed
Lcy6g0974 Lcy-Chr6:10234575 Lcy9g0626 Lcy-Chr9:20737737 4.60E-263 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66028 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0974 K13418 - csv:101208905 911.368