Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0977 ATGAACTCATCATCCACTAAATTTTACAATCCAGGGAGGATGGGATTGTATGAACCTATCCACCAGCTTGGAATGTGGGGAGAAACCTTTAGAAGCAATGCCAATTTAGATGCACCATCTCTTATTATGCAGGCCGATACCAAGTTAGAAAATCAGTCAGATGATGCTTCGCTCGGTTCATTAGGAGATCCCCATATATATGACCAAGAAGATACCAAACGTATCGATAAGATTCAAAGACGGCTCGCTCAAAATCGGGAAGCAGCTCGCAAAAGTCGCCTCCGAAAGAAGGCTTATATCAAGCAATTGGAAACGAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTTGCTGGATCCCGATTTGATAATAACCAGTTGGGTTTATCTGGAACCACGAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGGTAGAAGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATTACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACACTACTTTAAATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCTTACATTATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTTAAGGTTTTGATACCTCAGCTGGAGACACTGACCGATCAACAAATTTCAGAAACTAGTAGCCTTAGGAAATCGTGTCTACAAGCAGAAGATGCTCTACGACAAGGTATGGAAAAGCTCCAACAAAATCTATTTGAAAGCGTAGTGGCTGGTCAGCTGGGTGAAGGAAGCTGTCCCCTACAGATGACTGCTGCAATGGAGAGATTAGAAGCTCTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGGCAATCAGCTCAAGGTCTTCTTACTTTAGGGGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGGCGAACCGTACTGGTACTTGTGAGCCTGCATAG 1092 43.32 MNSSSTKFYNPGRMGLYEPIHQLGMWGETFRSNANLDAPSLIMQADTKLENQSDDASLGSLGDPHIYDQEDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQELEKARQQGLFAGSRFDNNQLGLSGTTNSGISAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTDQQISETSSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSCPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWANRTGTCEPA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10271897 10280204 - Maker00030026 Lcy6g0977 635421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0977 363 ProSiteProfiles DOG1 domain profile. 146 356 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy6g0977 363 PANTHER TRANSCRIPTION FACTOR TGA9 2 357 - -
Lcy6g0977 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0977 363 Pfam Seed dormancy control 163 238 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy6g0977 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0977 363 FunFam BZIP family transcription factor 76 125 - -
Lcy6g0977 363 Coils Coil 96 123 - -
Lcy6g0977 363 Gene3D - 76 125 - -
Lcy6g0977 363 SUPERFAMILY Leucine zipper domain 78 119 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0977 363 SMART brlzneu 73 135 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0977 363 Pfam bZIP transcription factor 76 111 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2336 Lcy-Chr10:46956212 Lcy6g0977 Lcy-Chr6:10271897 2.00E-117 dispersed
Lcy6g0977 Lcy-Chr6:10271897 Lcy7g0710 Lcy-Chr7:6731665 5.10E-92 dispersed
Lcy6g0977 Lcy-Chr6:10271897 Lcy10g0967 Lcy-Chr10:31075962 5.34E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20291 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0977 K14431 - csv:101208419 656.366