Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0987 ATGATGGGGCGAATTAAGTTGAAGATCCTTAATAGAATCGAAAACGACACTAATCGACAGGTCACTTTTTCCAGACGCAGAAATGGACTCATCAAAAAGGTTTACGAACTCTCCGCTCTCTGCGACATTGATATCGCTCTCATCATGTTCTCTCCTTCCGGCCGCCTCACCCAGTTCTCCGGTAGCCGCAGAATCGAGGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGATAGAGGAAGTCCTACATCAAGCAACTCCAATGTTGAGATGCAAGGAGCTGAAAACTCGGATGATCAAGCTTTCAAGAAGAGGTTGAATGAATGGCTTATTGAACATAATTTCTGTCTGGTCCCTACTAAATCTGTATCTGAAAATGCTTTTGTATCTAGTTGTGAGGTAAAGGAGGAGGTAAAGGAAGAGCGTAAAGTATCTTACGATTCAGGATCAGATTCAGTCGAACTAGACTCGGTCGGGACTCCAGGGACTGAGAGTAAAGGGAATCGGGTGAACCCTGGGCTTGTACCCGGGCTTATAATGGGGCGAGTTAAGTTGCAGATCAAGAGAATCGAAAACAACACCAATCGACAGGTCACTTTTTCCAAACGCAGAAATGGACTCATCAAAAAGGCTTACGAACTCTCCATTCTCTGCGACATCGATATCGCCCTCATCATGTTCTCTCCTTCCGGCCGCCTCAGCCAATTCTCCGGCCGCCGCAGAATCGAGGATGTTCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTACTTGGGACACTGAATAATCTGAAGACAGAGAACGATATCGCCCTTCAACTTGCCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTTGGTACATTGAGACACGAGCTTCAACTTGCGGAGCAGCAGCTCAGGTTATTCGAACCCGATCCTCTTTCATTCACATCGAATGGTGAAATAGAATCTTGCGAGAAGAACCTTTTAGACATCTTGGCGCGTATCACTCAAAAGAAGAAAGATCTATTAAGTAGTCACTTATCTCCATACGATCCTCCAAATCAGATCCAGATATATTTGGATTCACAAGAGGGAATACCAACGACCTTTGAAAACGATGTTGCTAATTGGTTGCCCGAAAATAATGGCCAGAACTCCACCCAAATTTGTGTTGCCTCCGAGTCTTCTTCAATTCCTCAAAGTGGTCAATATCCATCAACAGTATATGATCAAGTATCCCAAGCAACCAACATCAATGTCGGGTCATGCAACATTGGTGGCTGCGACATCGGAAACCCAAACGACGATGGCTACTCTCCTTGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCACAAGCCTCATTTGACACTCTAAAGCAAAGAGGGGGAGCTCCAACGATTCTTGACCCAAACCGCAGCCTAGTTCCAGATCCGGACGTTTGCGTTCCAGATCTGGCATTTGAATCGACGAAGCGGGGCTGGAACGATGGCTCGTTCGAATCCAAAAATTTGGAACGATCGAAGTGGGGCTCATTCAAATCTATGGATTTGGAACGATCTACACTGTCGAACGACCGTTCGAACATTTGCGTTCTAGATCCGACGTTTGTAAATCAGTTCGGGGCTCGTCGAAAACCACGAACACGCACTACCTCCCTTCACCTTGCCAGCAAAAACTGA 1728 45.54 MMGRIKLKILNRIENDTNRQVTFSRRRNGLIKKVYELSALCDIDIALIMFSPSGRLTQFSGSRRIEDVLARYINLPDHDRGSPTSSNSNVEMQGAENSDDQAFKKRLNEWLIEHNFCLVPTKSVSENAFVSSCEVKEEVKEERKVSYDSGSDSVELDSVGTPGTESKGNRVNPGLVPGLIMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIESCEKNLLDILARITQKKKDLLSSHLSPYDPPNQIQIYLDSQEGIPTTFENDVANWLPENNGQNSTQICVASESSSIPQSGQYPSTVYDQVSQATNINVGSCNIGGCDIGNPNDDGYSPWHHNYTTTQLLSSFIPQASFDTLKQRGGAPTILDPNRSLVPDPDVCVPDLAFESTKRGWNDGSFESKNLERSKWGSFKSMDLERSTLSNDRSNICVLDPTFVNQFGARRKPRTRTTSLHLASKN 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10413537 10429235 + Maker00029987 Lcy6g0987 635431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0987 575 ProSiteProfiles MADS-box domain profile. 2 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 Coils Coil 295 315 - -
Lcy6g0987 575 FunFam Agamous-like MADS-box protein AGL66 isoform A 16 81 - -
Lcy6g0987 575 SUPERFAMILY SRF-like 10 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 PRINTS MADS domain signature 203 218 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 PRINTS MADS domain signature 183 203 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 PRINTS MADS domain signature 218 239 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 ProSiteProfiles MADS-box domain profile. 181 241 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 SUPERFAMILY SRF-like 182 260 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 FunFam MADS-box transcription factor 41 193 271 - -
Lcy6g0987 575 MobiDBLite consensus disorder prediction 76 98 - -
Lcy6g0987 575 ProSitePatterns MADS-box domain signature. 183 237 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 190 237 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 MobiDBLite consensus disorder prediction 79 96 - -
Lcy6g0987 575 MobiDBLite consensus disorder prediction 141 172 - -
Lcy6g0987 575 MobiDBLite consensus disorder prediction 151 168 - -
Lcy6g0987 575 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy6g0987 575 CDD MADS_MEF2_like 182 255 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy6g0987 575 Gene3D - 15 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 Gene3D - 193 269 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 PANTHER SERUM RESPONSE FACTOR HOMOLOG 181 406 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy6g0987 575 SMART madsneu2 2 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 SMART madsneu2 181 240 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2538 Lcy-Chr5:48150829 Lcy6g0987 Lcy-Chr6:10413537 1.61E-21 dispersed
Lcy6g0987 Lcy-Chr6:10413537 Lcy9g2058 Lcy-Chr9:45376818 1.86E-23 dispersed
Lcy6g0987 Lcy-Chr6:10413537 Lcy7g0293 Lcy-Chr7:2526470 1.29E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20292 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0987 - - - 0.0