Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0987 ATGATGGGGCGAATTAAGTTGAAGATCCTTAATAGAATCGAAAACGACACTAATCGACAGGTCACTTTTTCCAGACGCAGAAATGGACTCATCAAAAAGGTTTACGAACTCTCCGCTCTCTGCGACATTGATATCGCTCTCATCATGTTCTCTCCTTCCGGCCGCCTCACCCAGTTCTCCGGTAGCCGCAGAATCGAGGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGATAGAGGAAGTCCTACATCAAGCAACTCCAATGTTGAGATGCAAGGAGCTGAAAACTCGGATGATCAAGCTTTCAAGAAGAGGTTGAATGAATGGCTTATTGAACATAATTTCTGTCTGGTCCCTACTAAATCTGTATCTGAAAATGCTTTTGTATCTAGTTGTGAGGTAAAGGAGGAGGTAAAGGAAGAGCGTAAAGTATCTTACGATTCAGGATCAGATTCAGTCGAACTAGACTCGGTCGGGACTCCAGGGACTGAGAGTAAAGGGAATCGGGTGAACCCTGGGCTTGTACCCGGGCTTATAATGGGGCGAGTTAAGTTGCAGATCAAGAGAATCGAAAACAACACCAATCGACAGGTCACTTTTTCCAAACGCAGAAATGGACTCATCAAAAAGGCTTACGAACTCTCCATTCTCTGCGACATCGATATCGCCCTCATCATGTTCTCTCCTTCCGGCCGCCTCAGCCAATTCTCCGGCCGCCGCAGAATCGAGGATGTTCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTACTTGGGACACTGAATAATCTGAAGACAGAGAACGATATCGCCCTTCAACTTGCCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTTGGTACATTGAGACACGAGCTTCAACTTGCGGAGCAGCAGCTCAGGTTATTCGAACCCGATCCTCTTTCATTCACATCGAATGGTGAAATAGAATCTTGCGAGAAGAACCTTTTAGACATCTTGGCGCGTATCACTCAAAAGAAGAAAGATCTATTAAGTAGTCACTTATCTCCATACGATCCTCCAAATCAGATCCAGATATATTTGGATTCACAAGAGGGAATACCAACGACCTTTGAAAACGATGTTGCTAATTGGTTGCCCGAAAATAATGGCCAGAACTCCACCCAAATTTGTGTTGCCTCCGAGTCTTCTTCAATTCCTCAAAGTGGTCAATATCCATCAACAGTATATGATCAAGTATCCCAAGCAACCAACATCAATGTCGGGTCATGCAACATTGGTGGCTGCGACATCGGAAACCCAAACGACGATGGCTACTCTCCTTGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCACAAGCCTCATTTGACACTCTAAAGCAAAGAGGGGGAGCTCCAACGATTCTTGACCCAAACCGCAGCCTAGTTCCAGATCCGGACGTTTGCGTTCCAGATCTGGCATTTGAATCGACGAAGCGGGGCTGGAACGATGGCTCGTTCGAATCCAAAAATTTGGAACGATCGAAGTGGGGCTCATTCAAATCTATGGATTTGGAACGATCTACACTGTCGAACGACCGTTCGAACATTTGCGTTCTAGATCCGACGTTTGTAAATCAGTTCGGGGCTCGTCGAAAACCACGAACACGCACTACCTCCCTTCACCTTGCCAGCAAAAACTGA 1728 45.54 MMGRIKLKILNRIENDTNRQVTFSRRRNGLIKKVYELSALCDIDIALIMFSPSGRLTQFSGSRRIEDVLARYINLPDHDRGSPTSSNSNVEMQGAENSDDQAFKKRLNEWLIEHNFCLVPTKSVSENAFVSSCEVKEEVKEERKVSYDSGSDSVELDSVGTPGTESKGNRVNPGLVPGLIMGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIESCEKNLLDILARITQKKKDLLSSHLSPYDPPNQIQIYLDSQEGIPTTFENDVANWLPENNGQNSTQICVASESSSIPQSGQYPSTVYDQVSQATNINVGSCNIGGCDIGNPNDDGYSPWHHNYTTTQLLSSFIPQASFDTLKQRGGAPTILDPNRSLVPDPDVCVPDLAFESTKRGWNDGSFESKNLERSKWGSFKSMDLERSTLSNDRSNICVLDPTFVNQFGARRKPRTRTTSLHLASKN 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10413537 10429235 + Maker00029987 Lcy6g0987 635431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0987 575 ProSiteProfiles MADS-box domain profile. 2 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 Coils Coil 295 315 - -
Lcy6g0987 575 FunFam Agamous-like MADS-box protein AGL66 isoform A 16 81 - -
Lcy6g0987 575 SUPERFAMILY SRF-like 10 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 PRINTS MADS domain signature 203 218 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 PRINTS MADS domain signature 183 203 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 PRINTS MADS domain signature 218 239 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 ProSiteProfiles MADS-box domain profile. 181 241 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 SUPERFAMILY SRF-like 182 260 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 FunFam MADS-box transcription factor 41 193 271 - -
Lcy6g0987 575 MobiDBLite consensus disorder prediction 76 98 - -
Lcy6g0987 575 ProSitePatterns MADS-box domain signature. 183 237 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 190 237 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 MobiDBLite consensus disorder prediction 79 96 - -
Lcy6g0987 575 MobiDBLite consensus disorder prediction 141 172 - -
Lcy6g0987 575 MobiDBLite consensus disorder prediction 151 168 - -
Lcy6g0987 575 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy6g0987 575 CDD MADS_MEF2_like 182 255 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy6g0987 575 Gene3D - 15 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 Gene3D - 193 269 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 PANTHER SERUM RESPONSE FACTOR HOMOLOG 181 406 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy6g0987 575 SMART madsneu2 2 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0987 575 SMART madsneu2 181 240 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0987 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2538 Lcy-Chr5:48150829 Lcy6g0987 Lcy-Chr6:10413537 1.61E-21 dispersed
Lcy6g0987 Lcy-Chr6:10413537 Lcy9g2058 Lcy-Chr9:45376818 1.86E-23 dispersed
Lcy6g0987 Lcy-Chr6:10413537 Lcy7g0293 Lcy-Chr7:2526470 1.29E-24 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20292 None None None None Lcy TF