Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0988 ATGTCGGTCGCCAACACCGACGCATCTCCGACCATGTCATCGGAGGCCTCGATGACGGTCGGGGATATGCATGCCCTCGACGTCAAGAAGAGCGGCAGCAGCCCCGCCGATAGGGCTCAGTGGGTGGCGAACCCACCGGAGCCACCGGGGCTATGGCGAGAGCTCCTCGATTCCCTCCGCGACACCATTCTTCCCGATCCGACCAAGCTTTTGTCCCTCAAGAAGAAGACCGGAACCCCTTTGGTTGGTACCCTTTTGCAGGCCATCTTCCCCATCCTCTCATGGGGCCGGAGCTACAATACCGGCAAGTTCAAAAACGACGTCTTGGCCGGTTTGACTCTTGCTAGCCTCTGCATTCCCCAGAGTATTGGGTATGCAAATCTGGCGAAGCTTGATCCTGAATATGGCCTGTATACGAGCATTGTGCCGCCGCTGGTTTATGCAGTGTTGGGAAGTTCGAGGGAAATAGCCATCGGTCCGGTGGCCATAGTTTCTCTGCTACTGCCGTCCATGATCGACAAAATTCAAGATCCCGCCGCCGACCCTCTTGCCTACAGAAACCTTGTCTTCACCGCCACCTTCTTCGCCGGAATCTTTCAAGCCGCCTTTGGACTCTTTCGGCTGGGATTTTTGGTGGATTTTCTGTCACATGCTGCCATAGTTGGGTTCATGGGTGGAGCAGCCATTGTAATTGGGCTTCAACAGCTCAAAGGACTGCTTGGCATCACTCACTTCACTAACAAAACTGATGTCCTCTCTGTAATGGAAGCTGTGTTTGGATCATTCCACCAAGATCATCCTTGGAATCCGTTGAACTTCATCATTGGCTCCTCGTTCCTGTCATTCATCCTCATCACCAGATTACTGGGCAAAAAGTACAAGAAACTGTTCTGGTTACCAGCCATAGCCCCACTTCTATCTGTAATCTTATCAACACTTTTAGTGTTCCTCACAAGAGCCGACCACCATGGCGTCAAGATCGTCAAGCGAGTCCCCGCCGGCCTCAACCCCATCTCCGCTCACCACATCCAAATCCACAGCCCTCACCTCCCCCAAATCGCCAAGATCGGCCTCATCGTCGCCGTCGTTGCCCTAACGGAGGCAGTTGCAGTGGGCAGATCGTTCGCCTCCATGAAAGGATACAACATTGATGGAAACAGAGAGATGGTTGCTTTGGGCTTCATGAACGTTGCTGGGTCTCTCACTTCTTGCTATACCGCAACTGGTTCTTTCTCGCGATCGGCAGTGAATTTCAGTGCTGGATGCGAGACGGCGGTATCAAACATAGTGATGGCATTAACAGTGATGATATCATTGGAGCTGTTGACAAAGCTTCTATATTTCACTCCCAACGCCATTCTCGCTTCCATCATTCTCTCTGCACTTCCAGGCCTCATTGATCTCCATGAAGCTTACAATATCTGGAAGATCGACAAGCTCGACTTCTTCGCCTGCCTCGGAGCTTTTCTTGGAGTCCTCTTTGTTTCCGTCGAAATCGGCCTTCTCCTTTCGGTAGTGATATCATTTGCAAAGATAATACTAATCTCAATGAAACCTGGGACTGAGATTTTGGGAAAACTCCCTGGAACTGATACCTTTTCTGATATTCATCAATATCCAATGGCTCTCAACACTCCTGGACTCCTCATCATTCGTGTTAAATCTGGCTTGCTTTGCTTTGCCAATGCCAACTTCGTCAAAGATAGAATTATGAGGTTCATCAGCAGCCAAGAAGATGCATCAGCAAAGAGAACCATTCACTTCCTAATCATTGATCTTTCCAGTTTAATGAACATTGACACTTCAGGAATTGCTTCTCTTGAAGAACTGCAGAATAGTTTGGCAGCCAGTGGAGTAGAGTTGGCCATTGCAAATCCAAAATGGCAAGTGATTCACAAGTTAAAGGTAGCAAATTTTGTTGCCAAGCTCAAAGGGAGAGTGTTCTTGAGTGTTGGGGAAGCTGTGGATGCATGCCTTTCAGCTAAAATGGGAGCCATCTAA 2001 49.38 MSVANTDASPTMSSEASMTVGDMHALDVKKSGSSPADRAQWVANPPEPPGLWRELLDSLRDTILPDPTKLLSLKKKTGTPLVGTLLQAIFPILSWGRSYNTGKFKNDVLAGLTLASLCIPQSIGYANLAKLDPEYGLYTSIVPPLVYAVLGSSREIAIGPVAIVSLLLPSMIDKIQDPAADPLAYRNLVFTATFFAGIFQAAFGLFRLGFLVDFLSHAAIVGFMGGAAIVIGLQQLKGLLGITHFTNKTDVLSVMEAVFGSFHQDHPWNPLNFIIGSSFLSFILITRLLGKKYKKLFWLPAIAPLLSVILSTLLVFLTRADHHGVKIVKRVPAGLNPISAHHIQIHSPHLPQIAKIGLIVAVVALTEAVAVGRSFASMKGYNIDGNREMVALGFMNVAGSLTSCYTATGSFSRSAVNFSAGCETAVSNIVMALTVMISLELLTKLLYFTPNAILASIILSALPGLIDLHEAYNIWKIDKLDFFACLGAFLGVLFVSVEIGLLLSVVISFAKIILISMKPGTEILGKLPGTDTFSDIHQYPMALNTPGLLIIRVKSGLLCFANANFVKDRIMRFISSQEDASAKRTIHFLIIDLSSLMNIDTSGIASLEELQNSLAASGVELAIANPKWQVIHKLKVANFVAKLKGRVFLSVGEAVDACLSAKMGAI 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10435839 10445837 - Maker00029889 Lcy6g0988 635432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0988 666 SUPERFAMILY SpoIIaa-like 546 658 IPR036513 -
Lcy6g0988 666 PANTHER SULFATE TRANSPORTER 84 660 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g0988 666 Pfam STAS domain 539 654 IPR002645 -
Lcy6g0988 666 Gene3D STAS domain 518 661 IPR036513 -
Lcy6g0988 666 ProSiteProfiles STAS domain profile. 555 658 IPR002645 -
Lcy6g0988 666 CDD STAS_SulP_like_sulfate_transporter 539 649 - -
Lcy6g0988 666 Pfam Sulfate permease family 104 486 IPR011547 GO:0016020(InterPro)
Lcy6g0988 666 ProSitePatterns SLC26A transporters signature. 133 154 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lcy6g0988 666 NCBIfam sulfate permease 91 649 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g0988 666 FunFam Sulfate transporter 31 518 661 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0988 Lcy-Chr6:10435839 Lcy9g1604 Lcy-Chr9:41227016 2.25E-198 dispersed
Lcy6g0988 Lcy-Chr6:10435839 Lcy10g1169 Lcy-Chr10:34229942 2.15E-275 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0988 K17469 - csv:116403192 1036.94