Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1012 ATGTTCCCTCTCTTCCTTCTGCTTCTCTTCTTCCACCTCCCATCCGCTTCTCCGGCCAAACTCCGCCCCGATTTCTACGCCCAGTCATGCCCTCAGGCGGAGTCCGTCGTCCGCTCTGTGATGCGGAATGCTCTGATCAGAGAGCCTCGGAGTGTCGCCTCTGTTATGCGCTTCCAGTTTCACGATTGCTTCGTTAATGGCTGTGATGCTTCTATGTTGTTGGATGATACGCCGACGATGCTTGGAGAGAAACTCTCTCTGTCGAACATAAATTCGCTTAGATCTTACGAAGTTGTTGATGAAGTGAAGGAGGCTGTGGAGAAGGTCTGTCCTGGAATTGTCTCTTGTGCAGATATCATTATCATGGCATCTAGAGATGCCGTTGCTCTGACGGGCGGCCCCAACTGGACAGTGAGATTGGGCAGGCTGGACAGCTTAACAGCAAGCCAAGAGGACTCAAACCAGATCATGCCAAGTCCAAGAGCCAATGCAAGCTCTCTCATTGACCTCTTCAGCAAATACAACCTCTCTGTCAAAGATCTGGTTTCTCTTTCGGGTTCGCACTCGATCGGCCAAGGTCGGTGTTTCTCCGTCATGTTTCGGCTCTACAACCAGTCTGGTACCGGGCGGCCGGACCCGGCCATCGAGCCGAGCTTCAGAGAAGAGCTCTTCAAGCGATGCCCTCAAGGTGGGGATGAAAATGTCACGATGAACCTTGACTCCACACCTTATGTTTTTGACAATCAGTACTTCAAGGACTTGGTTGGTGGGAGAGGGTTCTTGAATTCTGATGAAACTCTTTACACATTTGCTGAAACTAGAAGGTATGTGAGGTTTTTTAGCAAAAATCAAAGGGCATTTTTCAAGGCGTTTGTGGAGGGTATGCTGAAGATGGGGGACTTGCAGTCTGGCCGGCCCGGGGAAGTAAGAAGGAACTGTAGGGTAGTGAATGGCCAGTCTGTGATCATATAA 972 50.31 MFPLFLLLLFFHLPSASPAKLRPDFYAQSCPQAESVVRSVMRNALIREPRSVASVMRFQFHDCFVNGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVVDEVKEAVEKVCPGIVSCADIIIMASRDAVALTGGPNWTVRLGRLDSLTASQEDSNQIMPSPRANASSLIDLFSKYNLSVKDLVSLSGSHSIGQGRCFSVMFRLYNQSGTGRPDPAIEPSFREELFKRCPQGGDENVTMNLDSTPYVFDNQYFKDLVGGRGFLNSDETLYTFAETRRYVRFFSKNQRAFFKAFVEGMLKMGDLQSGRPGEVRRNCRVVNGQSVII 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10895091 10897402 + Maker00029992 Lcy6g1012 635456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1012 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Lcy6g1012 323 ProSiteProfiles Plant heme peroxidase family profile. 20 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 CDD secretory_peroxidase 20 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy6g1012 323 PANTHER PEROXIDASE 72-RELATED 12 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 Pfam Peroxidase 37 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 Gene3D Peroxidase, domain 2 158 298 - -
Lcy6g1012 323 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 Gene3D - 24 317 - -
Lcy6g1012 323 FunFam Peroxidase 24 167 - -
Lcy6g1012 323 SUPERFAMILY Heme-dependent peroxidases 21 317 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g1012 323 FunFam Peroxidase 158 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1012 Lcy-Chr6:10895091 Lcy8g2142 Lcy-Chr8:47576073 4.49E-89 dispersed
Lcy6g1012 Lcy-Chr6:10895091 Lcy8g1698 Lcy-Chr8:43551438 7.05E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1012 K00430 - csv:116406089 560.836