Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1021 ATGGATTTCGTAATGTTGTCCAATGAAAATGATGCACTCATTGAATTAAAGAAAGCATTGAATGCAACAAATAGTCAGCTCACAAGTTGGAACGCAAGTCATATCAATCCATGCAGTAGTTGGACCAATATTATGTGTAATGGAAACGATGTGACTACTATATCCTTGCCAACAATGGGATTTACTGGAACCTTGTCTCAGAGTATTGTTGTTCTAGAATCTCTTTCAACCCTGGACCTGAAGGGAAATTACATAACTGGAGAGATACCAGAGGATTTTGGAAACCTGACAAATTTGGTCAGATTGGATCTGGAGAATAACAACCTAACTGGTCAAATACCATCATCCCTGGGTAATCTTAAGAAATTACAGTTCCTAACTCTGAGTCAAAATGAGCTAACTGGGACTATACCTGAGTCATTTTCAACCCTTCCTCGCTTGATCAATCTTTTTCTTGATTCCAATGATCTCAGTGGCGAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAAGTACGTGGAACTTTTGAATACTATCAAGGTCGGGCATTCCCTACATGTGTCTTTAGGTGGTTCAAGGCCTGACTGGTCAGAATTTCAAAAGTTGCTAGAAGGGTTTTGTGTTTGCTTTCTCTGCATTCATCTAGAGAACCTTTACTTGTCCTCCAAGTTTCTGGCTGCATTACGGATGCCCTTCATCCTTTTAGTCAAGTTCATTTTAGTATCTAGGAAAAAGAGGGATTTAATTGAGAATGGCACTGATGGCTCCAGCCTACCTTCTTCTGTCTTTCCATCTGCTGGGATTAGAATCATCCAATATTTCCAGCAGTCCCCTGAAATTCACCTACTTCCTCCCCAGCCAGATTATCCTTCCAAGCATCTTCGAGTATCATATGTTTTGGCTCTGAAAGCCCGGAAAACTGGGAAATACTTGCATTTGTTTGATTTAACATCGAGAAACTGGGGAGTATCTTTTCGATCTGACACAGAAAAATTTCACGTTTACATTTGTCCCTCTGAGGAGGGTCCAGAAAAAGTCCAAATCAAGGCATTATACTTCTTTTCTGGAAATAAGTTGGATTGTGGCAAAAATTCTCATCGTTCCTGTGCTTCAGACAGTCCAAACTCAGGTGCTTCAAATAAGTCGAAGGTTGGCCTTATGGCTGGACTTATTGCTGGGTTAATAGTTGCTCTTCTTTTGGTCGGATTATTAGTTTTCTTGTGCAAGTGTAGATATAAAGGCTACAAGGGTGAAATTTTTGAAGATGTTCCCGGTGAAATTGATCGAAAAATTGCATTTGGTCAGCTGAAAAGATTTTCATGGAGGGAATTACAGCTAGCTACAGAAAACTTTAGTGAGGAAAATGTTATAGGACAAGGAGGCTTTGGAAAGGTTTACAAAGGGGTGCTTGCTGATGGCACCAAGGTTGCAGTGAAACAGTCAACTAATTATGAAAGCCATGGGGGAGATGCTGCCTTTCTGCGTGAAGTTGAGATGATCAGTGTAGCCGTTCACAGAAATCTATTGCGGCTGATTGGATTCTGTACAACTCAGACTGAACGCTTATTGGTATATCCCTTTATGCAGAACTTGAGTGTTGCCTACCATCTTCGAGGTGGGGAAATGAGAGAGTGGAGAAGAGAACTTGTGGGTAAACAGGTTGTGGATGTTATATTCAAGGGCCACAAGTTGGAAAGGACTTTTTGTGAGAGGGTGTGGAGGGTGGGGGATGATCACATCTTGAATTGGAAGGTGGTCTCAGATTGTGCCTGGGGCAGGTTGGGGATAGAACTTAAGCCTGGGGAACCTATTTTAGATTGGCCCACTCGAAAACGTGTGGCATTGGGCACAGCTCGTGGTTTAGGATATCTTCATGAACATTGCAATCCAAAGATTATTCACCGAGATGTTAAGGCTGCTAATGTATTGCTTGATGAGGATTTTGAAGCAGTTGTTGGCGATTTTGGCCTCGCAAAGTTGGTTGATGTTAGGAAGACTAACGTCACAACTCAAGTTCGGGGGACGGCTGGCCACATAGCACCGGAGTACTTATCCACTGGAAAATCATCAGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTTTTAGAACTTGTTACAGGGCAACGTGCAATGGACTTATCACGCTTGGAAGGAGATGACGTTTTACTGCTCGACCATGTCAAAAAATTGGAAAGGGAGAAGCGGCTCAATGCCATTGTGGATGAAAACCTGAATAACTATGATATTCAAGAGGTGGAGATGATGATCCAAGTTGCACTACTGTGCACGCAGCCATCTTCTGTCGAGCGACCGACAATGTCACAGGTCGTTCGGATGCTCGAGGGCGAGGGACTCGCAGAGAGGTGGGAAGAATGGCAGCATTTAGAGGTGACTCGCAGACAAGACTATGAGAGAATGCAAAGAAGATTCGCATTGGGGGATAATTCCAATTATAAACAGGAACCTGTCCAGTTGTCTGGTGGAAGATGA 2496 42.55 MDFVMLSNENDALIELKKALNATNSQLTSWNASHINPCSSWTNIMCNGNDVTTISLPTMGFTGTLSQSIVVLESLSTLDLKGNYITGEIPEDFGNLTNLVRLDLENNNLTGQIPSSLGNLKKLQFLTLSQNELTGTIPESFSTLPRLINLFLDSNDLSGEIPEQLFQVSKFKYVELLNTIKVGHSLHVSLGGSRPDWSEFQKLLEGFCVCFLCIHLENLYLSSKFLAALRMPFILLVKFILVSRKKRDLIENGTDGSSLPSSVFPSAGIRIIQYFQQSPEIHLLPPQPDYPSKHLRVSYVLALKARKTGKYLHLFDLTSRNWGVSFRSDTEKFHVYICPSEEGPEKVQIKALYFFSGNKLDCGKNSHRSCASDSPNSGASNKSKVGLMAGLIAGLIVALLLVGLLVFLCKCRYKGYKGEIFEDVPGEIDRKIAFGQLKRFSWRELQLATENFSEENVIGQGGFGKVYKGVLADGTKVAVKQSTNYESHGGDAAFLREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYHLRGGEMREWRRELVGKQVVDVIFKGHKLERTFCERVWRVGDDHILNWKVVSDCAWGRLGIELKPGEPILDWPTRKRVALGTARGLGYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTAGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRAMDLSRLEGDDVLLLDHVKKLEREKRLNAIVDENLNNYDIQEVEMMIQVALLCTQPSSVERPTMSQVVRMLEGEGLAERWEEWQHLEVTRRQDYERMQRRFALGDNSNYKQEPVQLSGGR 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11036422 11047542 - Maker00029963 Lcy6g1021 635465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1021 831 FunFam Somatic embryogenesis receptor-like kinase 1 592 802 - -
Lcy6g1021 831 Pfam Protein tyrosine and serine/threonine kinase 455 782 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1021 831 Coils Coil 6 26 - -
Lcy6g1021 831 Pfam Leucine Rich Repeat 74 96 IPR001611 GO:0005515(InterPro)
Lcy6g1021 831 SMART serkin_6 452 782 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1021 831 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 829 - -
Lcy6g1021 831 ProSiteProfiles Protein kinase domain profile. 452 787 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1021 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1021 831 Gene3D Ribonuclease Inhibitor 6 185 IPR032675 -
Lcy6g1021 831 SUPERFAMILY Protein kinase-like (PK-like) 430 783 IPR011009 -
Lcy6g1021 831 Gene3D Phosphorylase Kinase; domain 1 421 528 - -
Lcy6g1021 831 SUPERFAMILY L domain-like 8 233 - -
Lcy6g1021 831 Pfam Leucine rich repeat N-terminal domain 7 47 IPR013210 -
Lcy6g1021 831 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 6 167 - -
Lcy6g1021 831 SMART LRR_typ_2 144 168 IPR003591 -
Lcy6g1021 831 SMART LRR_typ_2 96 120 IPR003591 -
Lcy6g1021 831 SMART LRR_typ_2 72 95 IPR003591 -
Lcy6g1021 831 ProSitePatterns Protein kinases ATP-binding region signature. 458 480 IPR017441 GO:0005524(InterPro)
Lcy6g1021 831 Gene3D Transferase(Phosphotransferase) domain 1 597 802 - -
Lcy6g1021 831 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Lcy6g1021 831 FunFam Somatic embryogenesis receptor kinase 1 421 528 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1021 Lcy-Chr6:11036422 Lcy8g0059 Lcy-Chr8:1537500 5.94E-163 dispersed
Lcy6g1021 Lcy-Chr6:11036422 Lcy6g1022 Lcy-Chr6:11066891 3.83E-86 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66029 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1021 - - - 0.0