Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1022 ATGAAAATGGTGTTAGTTAGGATGGGAGAACTCTATCTTACAATTTTAGTACTGGTTTGCTTTCAGAATTTTGCTCTGTCTGATATTCAAGGTGATGCACTCTTTGCATTGAAGAACGCATTGAATGCAACTGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGTCCAATGTTATATGTAGTGGAAACAATGTGATCTCTGTATCCTTGTCAACAATGGGGTTTACTGGAACCTTGTCTCCGAAAATTGGGGTTCTTAAATCACTTTCAACCCTGATTTTGCAGGGAAATCACATAACTGGAGAAATACCAAAGGATTTTGGAAACCTAACAAATTTGGTCAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCATCTTCCCTGGGTAATCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCATCTAACTGGGACTATTCCTGAGTCTTTTTCAAGCCTTCCTAGCTTGATAAATCTTCTACTTGACTCAAATGATCTCAGTGGCCCAATTCCAGAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCTGGAAACAAGTTAAATTGTGGCGGGAAGTCTCTTCATGCCTGTGCTTCAGACAGTACAAACTCAGGTTCTTCAAATAAACCTAAGGTTGGCCTTATAGTTGGAATTATTGCTGGGTTTACCGTAGCTCTTCTTTTGGTCGGTGTATTATTTTTCTTGTGCAAGGGTAGATATAAAGGCTACAAGCACGAAGTGTTCGAAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTCTATGGAGGGAACTACAGCATGCTACAGAAAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGGAAGGTGTACAAAGGGGTGCTTGCCGATGGCACCAAAGTTGCAGTGAAACGGTTGACTGATTATGAAAGTCCGGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGGAACTTGTTGCGGCTGATTGGGTTCTGTACAACTCAGACAGAGCGTCTATTGGTGTATCCCTTTATGCAGAATTTGAGTGTTGCCTACCGTCTTCGAGCATCTTTAGTGGTGAAGGAGGGTGGGGGTTCTCATCTCTTGAATTGGAAGGTGGTCTCTGAGACTGTTTTTTTGGAAGGTGATGGTAACTTTCTTTCTCTGGGTGGATCTTTGGATGGGAAGTTGTACCCTTCAGTCTTCTTAGATTTGACAGTAAATGTCTTGTTCTATTGCTTTGTTCATTACCCTGCTGCTGCTATTCCCATTATTTTTGCTGAGCTGTGGAAGGAGAAAATACCTGAAGAAATTGTCTGCTTGCAATGGTGTGTTTGTTGTAGGAAATGCATTGGAAATTCTGAATCATAA 1437 40.71 MKMVLVRMGELYLTILVLVCFQNFALSDIQGDALFALKNALNATANQLTDWNPNQVNPCTWSNVICSGNNVISVSLSTMGFTGTLSPKIGVLKSLSTLILQGNHITGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNHLTGTIPESFSSLPSLINLLLDSNDLSGPIPEQLFQVPKFNFSGNKLNCGGKSLHACASDSTNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLCKGRYKGYKHEVFEDVAGEVDRRIAFGQLKRFLWRELQHATENFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRASLVVKEGGGSHLLNWKVVSETVFLEGDGNFLSLGGSLDGKLYPSVFLDLTVNVLFYCFVHYPAAAIPIIFAELWKEKIPEEIVCLQWCVCCRKCIGNSES 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11066891 11074883 - Maker00030036 Lcy6g1022 635466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1022 478 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Lcy6g1022 478 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Lcy6g1022 478 SMART tyrkin_6 290 460 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Lcy6g1022 478 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 394 - -
Lcy6g1022 478 Pfam Protein tyrosine and serine/threonine kinase 293 379 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1022 478 SUPERFAMILY Protein kinase-like (PK-like) 271 380 IPR011009 -
Lcy6g1022 478 ProSiteProfiles Protein kinase domain profile. 290 478 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1022 478 SUPERFAMILY L domain-like 31 200 - -
Lcy6g1022 478 SMART LRR_typ_2 92 115 IPR003591 -
Lcy6g1022 478 SMART LRR_typ_2 140 163 IPR003591 -
Lcy6g1022 478 SMART LRR_typ_2 164 188 IPR003591 -
Lcy6g1022 478 SMART LRR_typ_2 116 139 IPR003591 -
Lcy6g1022 478 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Lcy6g1022 478 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Lcy6g1022 478 FunFam Putative LRR receptor-like serine/threonine-protein kinase 27 210 - -
Lcy6g1022 478 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515(InterPro)
Lcy6g1022 478 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1022 Lcy-Chr6:11066891 Lcy8g0059 Lcy-Chr8:1537500 1.40E-70 dispersed
Lcy6g1021 Lcy-Chr6:11036422 Lcy6g1022 Lcy-Chr6:11066891 3.83E-86 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66030 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1022 - - - 0.0