Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1031 ATGACGGCGGCTGGGCGAGAGTTGAACGGCGGCGGCTGGGTAAAAGACGGACGGCGGAGCTGGGGGGAAGGCTTTGTGCATTTAGAGGATTTCCAAGTTTCTCCTTATTTCAGGGAGCGTGCAGTTGCTGCCCTCATCTCTCTGGGTGCTGCTCCTGGCGCAGTAGCAGATCCAAACCCCAAATGTCCATCTGGCAGAACTCCTGCCGATTTAGCATCCTTGAACGGGCACAAAGGCATTGCTGGTTATCTTGGAGAGTGTGCCCTAAGCGCCTACCTGGAATCTCTGAATGTCGATAATCAAGAAAGTAAGGCTGCAGACAGGTGTGGAGAAAAAGCAGTACAAACGGCTGCTGAGCGTGTTGCCACTCCGCATGAGGGCAATGACATGCATACATTGTCCCTGAAGGATTCATTAGCTGCCGTATTCAATGCTACCCAGGCTGCTGCTCGTATTCATGAGGTTATGAGGGTGCAGTCCTTCCAAAGAAAGCAATTGAAGTTGAACTACAACGAGGATGCGAATGGCAGCAGCACGTCGAATGATCAGGCTCTTTCATTTCTAGCAGTTAAGAGACGCAATCCAGGATCATATGATGAGCATGCTGCTGCCATTCGCATACAAAAGAAGTTCCGTGGTTGGAAGGGCAGACGAGATTTTCTGAAAATCCGACAGAGAATTATTAAAATTCAGGCCCACGTAAGAGGCCACCAGGTCCGAAAAAACTATAGGAAAATCGTGTGGTCAGTGGGAATTCTGGAAAAAGTTATTTTGCGTTGGAGAAGAAAAGGAAGTGGTTTACGAGGATTTAAACCAGAAGCACCAGCTGAGGATTCTAGCAAGCAAAATTCATCGGTGACAGAGGATGATGATGACTTTTTAAAACAGGGCAGAAAGCAAACAGAAGAAAGGTTGCAAAAGGCCCTTGCTAGAGTTAAGTCGATGGTGCAATATCCCGAGGCAAGGGATCAATACCGCAGGCTGTTAAAAACTGTCACAGAGATGCAACAAAGAAAGGTAATACCAAAACTTGCATTGCGATTCCTAAAATTTAACTGA 1059 47.31 MTAAGRELNGGGWVKDGRRSWGEGFVHLEDFQVSPYFRERAVAALISLGAAPGAVADPNPKCPSGRTPADLASLNGHKGIAGYLGECALSAYLESLNVDNQESKAADRCGEKAVQTAAERVATPHEGNDMHTLSLKDSLAAVFNATQAAARIHEVMRVQSFQRKQLKLNYNEDANGSSTSNDQALSFLAVKRRNPGSYDEHAAAIRIQKKFRGWKGRRDFLKIRQRIIKIQAHVRGHQVRKNYRKIVWSVGILEKVILRWRRKGSGLRGFKPEAPAEDSSKQNSSVTEDDDDFLKQGRKQTEERLQKALARVKSMVQYPEARDQYRRLLKTVTEMQQRKVIPKLALRFLKFN 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11180718 11184788 + Maker00029926 Lcy6g1031 635475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1031 352 MobiDBLite consensus disorder prediction 269 293 - -
Lcy6g1031 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 250 IPR027417 -
Lcy6g1031 352 Gene3D - 199 247 - -
Lcy6g1031 352 SMART iq_5 199 221 IPR000048 GO:0005515(InterPro)
Lcy6g1031 352 SMART iq_5 222 244 IPR000048 GO:0005515(InterPro)
Lcy6g1031 352 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 38 337 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy6g1031 352 FunFam Calmodulin-binding transcription activator 2 199 247 - -
Lcy6g1031 352 ProSiteProfiles IQ motif profile. 200 229 - -
Lcy6g1031 352 Pfam IQ calmodulin-binding motif 225 244 IPR000048 GO:0005515(InterPro)
Lcy6g1031 352 Pfam IQ calmodulin-binding motif 201 220 IPR000048 GO:0005515(InterPro)
Lcy6g1031 352 ProSiteProfiles IQ motif profile. 223 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1031 K21596 - - mdm:103401645 392.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1031 Lcy-Chr6:11180718 Lcy6g1073 Lcy-Chr6:11847812 3.12E-20 dispersed
Lcy6g1031 Lcy-Chr6:11180718 Lcy4g0249 Lcy-Chr4:3037982 5.86E-92 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1031 . 38 340 CAMTA Transcription Factor Family AT2G22300 55.7 1.7e-75 282.0
Lcy6g1031 . 38 332 CAMTA Transcription Factor Family AT5G09410 60.3 1.4e-89 328.6
Lcy6g1031 . 38 347 CAMTA Transcription Factor Family AT5G64220 59.4 2.9e-89 327.8
Lcy3g1261 . 300 423 CAMTA Transcription Factor Family AT5G64220 61.3 1.9e-43 175.6
Lcy3g1256 . 304 822 CAMTA Transcription Factor Family AT1G67310 63.9 7.7e-180 628.6
Lcy3g1261 . 292 432 CAMTA Transcription Factor Family AT1G67310 68.8 3.9e-54 211.1
Lcy12g0790 . 68 993 CAMTA Transcription Factor Family AT3G16940 53.1 5.5e-261 897.9
Lcy12g0790 . 11 658 CAMTA Transcription Factor Family AT4G16150 50.5 5.0e-186 649.0
Lcy6g1031 . 38 332 CAMTA Transcription Factor Family AT5G09410 60.3 1.4e-89 328.6
Lcy6g1031 . 38 347 CAMTA Transcription Factor Family AT5G64220 59.4 2.9e-89 327.8
Lcy3g1261 . 300 423 CAMTA Transcription Factor Family AT5G64220 61.3 1.9e-43 175.6
Lcy6g1031 . 38 340 CAMTA Transcription Factor Family AT2G22300 55.7 1.7e-75 282.0
Lcy3g1256 . 304 822 CAMTA Transcription Factor Family AT1G67310 63.9 7.7e-180 628.6
Lcy3g1261 . 292 432 CAMTA Transcription Factor Family AT1G67310 68.8 3.9e-54 211.1
Lcy12g0790 . 11 658 CAMTA Transcription Factor Family AT4G16150 50.5 5.0e-186 649.0
Lcy12g0790 . 68 993 CAMTA Transcription Factor Family AT3G16940 53.1 5.5e-261 897.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006128 0 6 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 2 1 2 0 1 1 1 3 0 1 3 5 0 38