Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1031 ATGACGGCGGCTGGGCGAGAGTTGAACGGCGGCGGCTGGGTAAAAGACGGACGGCGGAGCTGGGGGGAAGGCTTTGTGCATTTAGAGGATTTCCAAGTTTCTCCTTATTTCAGGGAGCGTGCAGTTGCTGCCCTCATCTCTCTGGGTGCTGCTCCTGGCGCAGTAGCAGATCCAAACCCCAAATGTCCATCTGGCAGAACTCCTGCCGATTTAGCATCCTTGAACGGGCACAAAGGCATTGCTGGTTATCTTGGAGAGTGTGCCCTAAGCGCCTACCTGGAATCTCTGAATGTCGATAATCAAGAAAGTAAGGCTGCAGACAGGTGTGGAGAAAAAGCAGTACAAACGGCTGCTGAGCGTGTTGCCACTCCGCATGAGGGCAATGACATGCATACATTGTCCCTGAAGGATTCATTAGCTGCCGTATTCAATGCTACCCAGGCTGCTGCTCGTATTCATGAGGTTATGAGGGTGCAGTCCTTCCAAAGAAAGCAATTGAAGTTGAACTACAACGAGGATGCGAATGGCAGCAGCACGTCGAATGATCAGGCTCTTTCATTTCTAGCAGTTAAGAGACGCAATCCAGGATCATATGATGAGCATGCTGCTGCCATTCGCATACAAAAGAAGTTCCGTGGTTGGAAGGGCAGACGAGATTTTCTGAAAATCCGACAGAGAATTATTAAAATTCAGGCCCACGTAAGAGGCCACCAGGTCCGAAAAAACTATAGGAAAATCGTGTGGTCAGTGGGAATTCTGGAAAAAGTTATTTTGCGTTGGAGAAGAAAAGGAAGTGGTTTACGAGGATTTAAACCAGAAGCACCAGCTGAGGATTCTAGCAAGCAAAATTCATCGGTGACAGAGGATGATGATGACTTTTTAAAACAGGGCAGAAAGCAAACAGAAGAAAGGTTGCAAAAGGCCCTTGCTAGAGTTAAGTCGATGGTGCAATATCCCGAGGCAAGGGATCAATACCGCAGGCTGTTAAAAACTGTCACAGAGATGCAACAAAGAAAGGTAATACCAAAACTTGCATTGCGATTCCTAAAATTTAACTGA 1059 47.31 MTAAGRELNGGGWVKDGRRSWGEGFVHLEDFQVSPYFRERAVAALISLGAAPGAVADPNPKCPSGRTPADLASLNGHKGIAGYLGECALSAYLESLNVDNQESKAADRCGEKAVQTAAERVATPHEGNDMHTLSLKDSLAAVFNATQAAARIHEVMRVQSFQRKQLKLNYNEDANGSSTSNDQALSFLAVKRRNPGSYDEHAAAIRIQKKFRGWKGRRDFLKIRQRIIKIQAHVRGHQVRKNYRKIVWSVGILEKVILRWRRKGSGLRGFKPEAPAEDSSKQNSSVTEDDDDFLKQGRKQTEERLQKALARVKSMVQYPEARDQYRRLLKTVTEMQQRKVIPKLALRFLKFN 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11180718 11184788 + Maker00029926 Lcy6g1031 635475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1031 352 MobiDBLite consensus disorder prediction 269 293 - -
Lcy6g1031 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 250 IPR027417 -
Lcy6g1031 352 Gene3D - 199 247 - -
Lcy6g1031 352 SMART iq_5 199 221 IPR000048 GO:0005515(InterPro)
Lcy6g1031 352 SMART iq_5 222 244 IPR000048 GO:0005515(InterPro)
Lcy6g1031 352 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 38 337 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy6g1031 352 FunFam Calmodulin-binding transcription activator 2 199 247 - -
Lcy6g1031 352 ProSiteProfiles IQ motif profile. 200 229 - -
Lcy6g1031 352 Pfam IQ calmodulin-binding motif 225 244 IPR000048 GO:0005515(InterPro)
Lcy6g1031 352 Pfam IQ calmodulin-binding motif 201 220 IPR000048 GO:0005515(InterPro)
Lcy6g1031 352 ProSiteProfiles IQ motif profile. 223 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1031 Lcy-Chr6:11180718 Lcy6g1073 Lcy-Chr6:11847812 3.12E-20 dispersed
Lcy6g1031 Lcy-Chr6:11180718 Lcy4g0249 Lcy-Chr4:3037982 5.86E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1031 K21596 - mdm:103401645 392.889