Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1047 ATGGCTGGTAAAGCTCAAATCCCTACCAAAAGCTCAGCGCTTATTTCTATGATTGCTGATGAGGATACGGTGGTTGGATTTCTTCTCGCTGGAGTTGGTAATGTTGACCTGCGAAGAAAAACTAATTACCTTATAGTGGACTCAAGGCATTCAAATAAGGAGAAATGGTACAAAGGGATGCTTGGAACAGATTTCACTAACGTGAGCCTTCCCCCTCTTGAGCAAATAAAGCTCTTCCACATTAATGTAGCTCTCAACTTTTGGGTATCCCCCAATAGGAGCCCCCAGGCTGTTCTTCAACATGAGACAACTGTTAAACAAATTGAAGATGCTTTCAAAGAGTTCACTACAAGGGAGGATATTGCAATAGTGATGATAAGTCAATATGTCGCAAACATGATCAGGTTTCTGGTAGACAGCTATAACAAGCCAATTCCTGCAATATTGGAGATTCCTTCCAAGGATCATCCATATGACCCTGCACATGATTCAATTCTTTCGCGAGTAAAGAACCTGTTTTCTACTGAATCGGTGGCATCTGGGAGGCGTTAA 552 42.03 MAGKAQIPTKSSALISMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSRHSNKEKWYKGMLGTDFTNVSLPPLEQIKLFHINVALNFWVSPNRSPQAVLQHETTVKQIEDAFKEFTTREDIAIVMISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSILSRVKNLFSTESVASGRR 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11339409 11346532 + Maker00029701 Lcy6g1047 635491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1047 183 Gene3D ATPase, V1 complex, subunit F 85 175 IPR036906 GO:0034220(InterPro)
Lcy6g1047 183 Pfam ATP synthase (F/14-kDa) subunit 15 169 IPR008218 GO:0034220(InterPro)|GO:0046961(InterPro)
Lcy6g1047 183 NCBIfam V-type ATPase subunit F 97 177 IPR005772 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy6g1047 183 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 53 - GO:0016020(PANTHER)
Lcy6g1047 183 SUPERFAMILY AtpF-like 103 171 IPR036906 GO:0034220(InterPro)
Lcy6g1047 183 Gene3D ATPase, V1 complex, subunit F 9 68 IPR036906 GO:0034220(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2150 Lcy-Chr2:43668973 Lcy6g1047 Lcy-Chr6:11339409 8.92E-27 dispersed
Lcy2g2151 Lcy-Chr2:43674103 Lcy6g1047 Lcy-Chr6:11339409 1.13E-52 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1047 K02151 - csv:101215239 223.787