Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1056 ATGGAATTCGACGATCACGAAGACGACATGGAACTGGAAGCTCCAACAAACTACAACAACAACAACAACAAACCCCTTTCCCGGCTCAACAAAAACCCAACTCCGGTCCACACGAACCGCCCCACCTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCCGTCGGTGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCTGCAGGACCGGACGGCTCTCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGACGTCGCCGACGACGACGGCGACGGAGAATCTCCGTTCGTTTCGTACTGGCGGGGTCCGGCAGGGTACCTCCACGTAGCGCCGCAGAGGCGGATGCTGGCGCTGCCGTCGCCTTCTTCTGGGGGCGGGAGAAAGCGGCTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGTTGGTGATGGCGGAGAAGCTGGACTGGCGGATTCAGAAGAACGATGAAGCGGCGGTGATGGAGTTGTGCAATGAAATCGGGGTGAAGCGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGAATCTGAAGAAAACAAATTTTCCCTAACAAACTCTCTCAACTGA 639 56.65 MEFDDHEDDMELEAPTNYNNNNNKPLSRLNKNPTPVHTNRPTYNYKECLKNHAVAVGGHALDGCGEFMPAGPDGSLDALKCAACNCHRNFHRKDVADDDGDGESPFVSYWRGPAGYLHVAPQRRMLALPSPSSGGGRKRLRTKFTEEQKEKMLVMAEKLDWRIQKNDEAAVMELCNEIGVKRRVLKVWMHNNKNTFRKESEENKFSLTNSLN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11439449 11440087 - Maker00029839 Lcy6g1056 635500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1056 212 MobiDBLite consensus disorder prediction 14 37 - -
Lcy6g1056 212 MobiDBLite consensus disorder prediction 1 37 - -
Lcy6g1056 212 Gene3D - 127 198 - -
Lcy6g1056 212 Pfam ZF-HD protein dimerisation region 43 95 IPR006456 -
Lcy6g1056 212 FunFam Zinc-finger homeodomain protein 2 126 198 - -
Lcy6g1056 212 NCBIfam homeobox domain, ZF-HD class 137 194 IPR006455 -
Lcy6g1056 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 45 94 IPR006456 -
Lcy6g1056 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 44 94 IPR006456 -
Lcy6g1056 212 SUPERFAMILY Homeodomain-like 130 198 IPR009057 -
Lcy6g1056 212 ProSiteProfiles 'Homeobox' domain profile. 135 199 IPR001356 GO:0003677(InterPro)
Lcy6g1056 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 195 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1056 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0823 Lcy-Chr1:7009942 Lcy6g1056 Lcy-Chr6:11439449 3.29E-67 dispersed
Lcy6g1056 Lcy-Chr6:11439449 Lcy7g1989 Lcy-Chr7:46615929 2.70E-44 dispersed
Lcy5g2356 Lcy-Chr5:46391007 Lcy6g1056 Lcy-Chr6:11439449 5.75E-42 transposed
Lcy6g0911 Lcy-Chr6:9251096 Lcy6g1056 Lcy-Chr6:11439449 1.95E-21 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20294 None None None None Lcy TF