Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g1056 | ATGGAATTCGACGATCACGAAGACGACATGGAACTGGAAGCTCCAACAAACTACAACAACAACAACAACAAACCCCTTTCCCGGCTCAACAAAAACCCAACTCCGGTCCACACGAACCGCCCCACCTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCCGTCGGTGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCTGCAGGACCGGACGGCTCTCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGACGTCGCCGACGACGACGGCGACGGAGAATCTCCGTTCGTTTCGTACTGGCGGGGTCCGGCAGGGTACCTCCACGTAGCGCCGCAGAGGCGGATGCTGGCGCTGCCGTCGCCTTCTTCTGGGGGCGGGAGAAAGCGGCTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGTTGGTGATGGCGGAGAAGCTGGACTGGCGGATTCAGAAGAACGATGAAGCGGCGGTGATGGAGTTGTGCAATGAAATCGGGGTGAAGCGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGAATCTGAAGAAAACAAATTTTCCCTAACAAACTCTCTCAACTGA | 639 | 56.65 | MEFDDHEDDMELEAPTNYNNNNNKPLSRLNKNPTPVHTNRPTYNYKECLKNHAVAVGGHALDGCGEFMPAGPDGSLDALKCAACNCHRNFHRKDVADDDGDGESPFVSYWRGPAGYLHVAPQRRMLALPSPSSGGGRKRLRTKFTEEQKEKMLVMAEKLDWRIQKNDEAAVMELCNEIGVKRRVLKVWMHNNKNTFRKESEENKFSLTNSLN | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11439449 | 11440087 | - | Maker00029839 | Lcy6g1056 | 635500 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g1056 | 212 | MobiDBLite | consensus disorder prediction | 14 | 37 | - | - | |
Lcy6g1056 | 212 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Lcy6g1056 | 212 | Gene3D | - | 127 | 198 | - | - | |
Lcy6g1056 | 212 | Pfam | ZF-HD protein dimerisation region | 43 | 95 | IPR006456 | - | |
Lcy6g1056 | 212 | FunFam | Zinc-finger homeodomain protein 2 | 126 | 198 | - | - | |
Lcy6g1056 | 212 | NCBIfam | homeobox domain, ZF-HD class | 137 | 194 | IPR006455 | - | |
Lcy6g1056 | 212 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 45 | 94 | IPR006456 | - | |
Lcy6g1056 | 212 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 44 | 94 | IPR006456 | - | |
Lcy6g1056 | 212 | SUPERFAMILY | Homeodomain-like | 130 | 198 | IPR009057 | - | |
Lcy6g1056 | 212 | ProSiteProfiles | 'Homeobox' domain profile. | 135 | 199 | IPR001356 | GO:0003677(InterPro) | |
Lcy6g1056 | 212 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 23 | 195 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0823 | Lcy-Chr1:7009942 | Lcy6g1056 | Lcy-Chr6:11439449 | 3.29E-67 | dispersed | |
Lcy6g1056 | Lcy-Chr6:11439449 | Lcy7g1989 | Lcy-Chr7:46615929 | 2.70E-44 | dispersed | |
Lcy5g2356 | Lcy-Chr5:46391007 | Lcy6g1056 | Lcy-Chr6:11439449 | 5.75E-42 | transposed | |
Lcy6g0911 | Lcy-Chr6:9251096 | Lcy6g1056 | Lcy-Chr6:11439449 | 1.95E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20294 | None | None | None | None | Lcy | TF |
Pathway information
