Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1056 ATGGAATTCGACGATCACGAAGACGACATGGAACTGGAAGCTCCAACAAACTACAACAACAACAACAACAAACCCCTTTCCCGGCTCAACAAAAACCCAACTCCGGTCCACACGAACCGCCCCACCTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCCGTCGGTGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCTGCAGGACCGGACGGCTCTCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGACGTCGCCGACGACGACGGCGACGGAGAATCTCCGTTCGTTTCGTACTGGCGGGGTCCGGCAGGGTACCTCCACGTAGCGCCGCAGAGGCGGATGCTGGCGCTGCCGTCGCCTTCTTCTGGGGGCGGGAGAAAGCGGCTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGTTGGTGATGGCGGAGAAGCTGGACTGGCGGATTCAGAAGAACGATGAAGCGGCGGTGATGGAGTTGTGCAATGAAATCGGGGTGAAGCGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGAATCTGAAGAAAACAAATTTTCCCTAACAAACTCTCTCAACTGA 639 56.65 MEFDDHEDDMELEAPTNYNNNNNKPLSRLNKNPTPVHTNRPTYNYKECLKNHAVAVGGHALDGCGEFMPAGPDGSLDALKCAACNCHRNFHRKDVADDDGDGESPFVSYWRGPAGYLHVAPQRRMLALPSPSSGGGRKRLRTKFTEEQKEKMLVMAEKLDWRIQKNDEAAVMELCNEIGVKRRVLKVWMHNNKNTFRKESEENKFSLTNSLN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11439449 11440087 - Maker00029839 Lcy6g1056 635500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1056 212 MobiDBLite consensus disorder prediction 14 37 - -
Lcy6g1056 212 MobiDBLite consensus disorder prediction 1 37 - -
Lcy6g1056 212 Gene3D - 127 198 - -
Lcy6g1056 212 Pfam ZF-HD protein dimerisation region 43 95 IPR006456 -
Lcy6g1056 212 FunFam Zinc-finger homeodomain protein 2 126 198 - -
Lcy6g1056 212 NCBIfam homeobox domain, ZF-HD class 137 194 IPR006455 -
Lcy6g1056 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 45 94 IPR006456 -
Lcy6g1056 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 44 94 IPR006456 -
Lcy6g1056 212 SUPERFAMILY Homeodomain-like 130 198 IPR009057 -
Lcy6g1056 212 ProSiteProfiles 'Homeobox' domain profile. 135 199 IPR001356 GO:0003677(InterPro)
Lcy6g1056 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 195 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0823 Lcy-Chr1:7009942 Lcy6g1056 Lcy-Chr6:11439449 3.29E-67 dispersed
Lcy6g1056 Lcy-Chr6:11439449 Lcy7g1989 Lcy-Chr7:46615929 2.70E-44 dispersed
Lcy5g2356 Lcy-Chr5:46391007 Lcy6g1056 Lcy-Chr6:11439449 5.75E-42 transposed
Lcy6g0911 Lcy-Chr6:9251096 Lcy6g1056 Lcy-Chr6:11439449 1.95E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20294 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1056 - - - 0.0