Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g1062 | ATGGTGTTAGGTTTAGAATCTGCGGTGTTCCAACAAGATCACTTGATTGGCTATGGTTGGAAAGATCTGCAACCAATGGGAAGAGGCGAAGTTCTTCGGAACTTCGTCTACGACGGATTGGGAGAAGAAGACTACGATGGCTCGGAGATTTTTAACCCGGCCAATTGGGGTCATTCTACTCCACAAAATCATTCTGCATCGGTTGTTAATGTTGTTGGACGATCTTTGCCAGAAAATGATTATGGTATGAATAAAGTGTTGGTATATGGCGGAGGATCTTGCCCGATGGAGGCACCGGTGGCGAAGAGAGGGCGGCGGAAGCGACGGAGGGCGAAGGTTGTGAAGAATAGTGAGGAAATTGAGAACCAAAGAATGACACACATTGCTGTTGAACGTAATAGGAGAAAGCTAATGAATGAGTACCTGTCTATGCTGAGATCCATGATGCCTTCCTCTTATACTCAAAGGGGAGACCAGGCATCGATCGTCGGAGGGACGATCAACTTCGTGAAGGAGCTAGAACAGCTGCTGCAGTGCTTAGAGGCAGAGAAGCAAACCCAACAACAGGCAACGGACGATCAATGGACGACGACCCAGAATATTCTGTCTTATTCCGGCGAGGGTCCGGTGAAGTCGGCGGCGGCGGCGGTGAAGGTGGAGGTGACGGTGATAGAAAGCTACGCGAATATAAAAATGATGGCTGAGAATCGGCCGAAACAGCTGCTGAAAGTGGTGGTGGAATTGCATTCTCTTCAATTTTTGATTCTTCACATTAACGTCACAACCATTCGCCAAATGGTTCTCTATTGTTTCAGCGTTAAGATTGAAGATGATTGTAAACTGAGCACTGTGGGTGAGATTACTGCAGCTGTGAATGAAATGTTCGAACGGATCCATATGGAAAAAGTTTGA | 912 | 46.93 | MVLGLESAVFQQDHLIGYGWKDLQPMGRGEVLRNFVYDGLGEEDYDGSEIFNPANWGHSTPQNHSASVVNVVGRSLPENDYGMNKVLVYGGGSCPMEAPVAKRGRRKRRRAKVVKNSEEIENQRMTHIAVERNRRKLMNEYLSMLRSMMPSSYTQRGDQASIVGGTINFVKELEQLLQCLEAEKQTQQQATDDQWTTTQNILSYSGEGPVKSAAAAVKVEVTVIESYANIKMMAENRPKQLLKVVVELHSLQFLILHINVTTIRQMVLYCFSVKIEDDCKLSTVGEITAAVNEMFERIHMEKV | 303 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 11624684 | 11627289 | - | Maker00029733 | Lcy6g1062 | 635506 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g1062 | 303 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 122 | 173 | IPR011598 | GO:0046983(InterPro) | |
| Lcy6g1062 | 303 | Gene3D | - | 114 | 190 | IPR036638 | GO:0046983(InterPro) | |
| Lcy6g1062 | 303 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 121 | 191 | IPR036638 | GO:0046983(InterPro) | |
| Lcy6g1062 | 303 | Pfam | Helix-loop-helix DNA-binding domain | 123 | 174 | IPR011598 | GO:0046983(InterPro) | |
| Lcy6g1062 | 303 | Coils | Coil | 170 | 190 | - | - | |
| Lcy6g1062 | 303 | PANTHER | MAX DIMERIZATION, MAD | 68 | 296 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lcy6g1062 | 303 | CDD | bHLH_AtFAMA_like | 125 | 184 | - | - | |
| Lcy6g1062 | 303 | SMART | finulus | 128 | 179 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g1889 | Lcy-Chr4:45066112 | Lcy6g1062 | Lcy-Chr6:11624684 | 3.54E-57 | dispersed | |
| Lcy6g0095 | Lcy-Chr6:886988 | Lcy6g1062 | Lcy-Chr6:11624684 | 4.75E-20 | dispersed | |
| Lcy6g1062 | Lcy-Chr6:11624684 | Lcy1g0855 | Lcy-Chr1:7309351 | 2.90E-06 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20296 | None | None | None | None | Lcy | TF |
Pathway information