Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1074 ATGGGTTTTGATGATATTTCTCATACAGCCTTGGTTTTGGGCTTAGGGCTCTCAGAAGAAGCTGCTTCTCCAATTATCAACAACAAGTTGAAGAAAAAGCCTGCTCCTTGCTCCTCTACTTCACTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTCTCCGCCTACACTCACAGGAAACAACTCGTCGACGTTAACAAGATCGTCAACTCTGACGTCGTCGCTGTCGATCCGTATCGCCAAGCTTCCCCTCATAGCAGCGCCGTTTGTTCTTCCTTCTCCGGTGGCGGCGGGGGTAGGGTTAAAAGGGAGAGAGACCTCAGCAGTGAAGAAGTTGACTTGGAGAGGGTTTCTTCGAGAATCAGCGATGAAGATGAAGATGGTTCCAATACTAGAAAGAAGCTCAGGCTTTCTAAAGAACAATCCGCTCTCTTGGAAGAGAGTTTCAAACAAAATAGCACTCTCAACCCGAAGCAAAAACAAGCCTTGGCGAGACAATTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAGAATAGGAGAGCTCGAACGAAACTGAAACAAACAGAAGTAGATTGTGAGTTCTTGAAGAAGTGTTGCGAGACGCTGACTGATGAAAACAGAAGACTACAAAAGGAGGTACAAGAATTGAAGGCACTGAAGCTGGCACAGCCTCTATACATGCACATGCCAGCAGCAACATTAACGATGTGTCCTTCATGCGAAAGGGTCGGCGGCGTCGGCGTCGGCGACGGCGCTTCCAAAGCCAAATTTTCAATGGCTCCCAAGCCTCACTTTTACAACCCCTTCTCCAATCCTTCCGCCGCATGTTAG 837 47.43 MGFDDISHTALVLGLGLSEEAASPIINNKLKKKPAPCSSTSLDFEPCALTLGFSAYTHRKQLVDVNKIVNSDVVAVDPYRQASPHSSAVCSSFSGGGGGRVKRERDLSSEEVDLERVSSRISDEDEDGSNTRKKLRLSKEQSALLEESFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKLAQPLYMHMPAATLTMCPSCERVGGVGVGDGASKAKFSMAPKPHFYNPFSNPSAAC 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11853768 11855638 - Maker00029852 Lcy6g1074 635518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1074 278 Gene3D - 125 193 - -
Lcy6g1074 278 FunFam Homeobox-leucine zipper protein 18 117 193 - -
Lcy6g1074 278 MobiDBLite consensus disorder prediction 99 135 - -
Lcy6g1074 278 SMART halz 188 231 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1074 278 SMART HOX_1 130 192 IPR001356 GO:0003677(InterPro)
Lcy6g1074 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 32 270 IPR050762 -
Lcy6g1074 278 SUPERFAMILY Homeodomain-like 120 189 IPR009057 -
Lcy6g1074 278 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1074 278 Coils Coil 194 224 - -
Lcy6g1074 278 Pfam Homeodomain 132 186 IPR001356 GO:0003677(InterPro)
Lcy6g1074 278 CDD homeodomain 132 189 IPR001356 GO:0003677(InterPro)
Lcy6g1074 278 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy6g1074 278 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677(InterPro)
Lcy6g1074 278 MobiDBLite consensus disorder prediction 84 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1451 Lcy-Chr10:38288078 Lcy6g1074 Lcy-Chr6:11853768 6.09E-42 dispersed
Lcy3g1945 Lcy-Chr3:46602999 Lcy6g1074 Lcy-Chr6:11853768 2.21E-65 dispersed
Lcy6g1074 Lcy-Chr6:11853768 Lcy9g1997 Lcy-Chr9:44836583 1.86E-69 dispersed
Lcy1g0879 Lcy-Chr1:7567121 Lcy6g1074 Lcy-Chr6:11853768 2.39E-110 wgd
Lcy6g0947 Lcy-Chr6:9793608 Lcy6g1074 Lcy-Chr6:11853768 1.24E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20297 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1074 K09338 - csv:101205848 382.874