Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1081 ATGCGTCTTCTCCGTCAATCTCTCTTTCTCAACGTCTGCGCGACCTCCGCCTTCTACGAAAAGAGATTTATTTTCTTGCTCACCATCTGCGCGACCTCCGTCAATCGCTCAGTGACCCAATCGCTTTCACCTCCGACCAAAGCCCAATCTCGCTTTCACCGGCAACCGAAACCACTTCATCGGCAATCGCTCATTGGCGTCGTCACTTTCATTTTTCGTTTTCGATGGGTTCAGTTTCCTTTGCTTCAGCCGGTAAATCGTTGCTCTTTCTCGCCGGCGTCGTTGCTCTTTGCTCATGGTCTGTCGCCGACGTCGTTGCGCTTGCCACTGTGCCTTCATCGCCGAACAAGCTTTTCTTCTCCCCTCTCCGCTGCTCTGACCCAAATCCTTTCTTACTTCAGAATCCCCAATTTTCATCGGGAGAGGAGAACGATCAACAAAACGAAAAAGGGTTACCCGACCCGACCAGTTCGGGTTAGGTCAGGTCGGGTTGTTCCTACAACCGACCCCAAGTTGGGTCGGATCAGTTTGTCCGTACAATCGACCCGGGCCGGAGCTTTTACACCCCTAGAATCTATCATTAGGGTTTACTTGGCATTCGGAGGCGATTTAGGGCTGAACTGTGTGGAATCGGGGCGGACCGGGGCAACAGGGACCGAACGGGGTCGTAAGGACTCGACCCACGCAAGTGGGCCGAGTGGTCGGCCTCGGCCTCGTCCTTGGGTCGAGGCCGATCATATGGGTTGGGCCAAGGCCCGATCCCTCCGGCCTTGGGCCGACCCTCTGGCCTGTTCCTCCTCTAGGGCCCATTTCCTGGTTGTCTCCTTGGACTGTATTGGATTGTCCTGCTTAGTCCTTAGATTCTGCCCATCTACCATGGCTGCCAATTTCACCCTGCTTAAACCCTGTTCGGCATTTTCGACCCCATCATCCGTTCAGAGGAGATTTCGTGCGCAGAGACTAGTATGCACTGGCCCATCTTCCTCTTTTTATCCACAATGCCCGGGAGGAGCTAATGGTTTGTGCATCGTTAAATGTGCTTCTTCAAATGGGAAGGAGCCTGATTCGTTGGGTAATGGAGTTAAAAGTGTGAAGCAGTTACTTGAAGAGAAACGGCGAGCAGAATTGTCTGCTCGGATTGCTTCTGGAGAATTCACAGTCCAAAAAGCTGGTTTTCCATCTGTATTGAGGAGTGGTTTGTCGAAGATGGGTGTTCCCAGTGAGATTCTGGACATATTATTTGCTTTCGTCAATGCTCAAGATGAATATCCCAAAATTCCTGAAGCAAAAGGATCAATAAATGCAGTTCGTAGTGAGGCCTTCTTCATACCTCTGTATGAGCTTTATCTCACCTATGGTGGAATATTTAGATTGACCTTTGGGCCAAAGTCATTTTTGATAGTTTCAGATCCTTCAATTGCCAAACATATACTGAAGGATAATCCAAAGAATTATTCTAAGGGCATCTTAGCTGAAATTCTAGACTTTGTCATGGGGAAGGGACTTATACCAGCTGATGGGGAGATATGGCGTGTACGAAGACGGGCTATAGTCCCATCTTTGCATATGAAGTATGTAGGAGCTATGATTAATCTTTTTGGAGAAGCTGCAGATAGGCTTTGCAAGAAGCTAGATGCCGCAGCATCTGATGGGGTAGATGTGGAATTGGAGTCCCTCTTCTCCCGTCTGACTTTAGATATCATTGGCAAAGCAGTTTTTAACTATGACTTTGATTCACTTACAAACGATGCTGGCATAGTCGAGCAGGCTGTTTACACTGTGCTAAGAGAAGCAGAAGATCGTAGTGTTGCACCAATTCCGGTGTGGGAAATTCCAATTTGGAAGGATATTTCACCACGGCAAAAAAAAGTCTCTAAAGCCCTCAAATTGATCAATGACACCCTCGATCAACTAATTGCCATATGCAAGAGGATGGTTGATGAGGAGGAGCTGCAGTTTCATGAGGAATACATGAATGAGCAAGATCCTAGCATCCTTCATTTCCTCTTGGCATCAGGAGATGATGTTTCGAGCAAGCAGCTTCGTGATGACTTGATGACTATGCTTATAGCTGGGCATGAAACATCTGCTGCAGTTTTAACATGGACCTTTTATCTTCTTTCCCAGGAGCCTAGGATCATGGCCAAGCTCCAAGAGGAGGTTGATTCGGTCCTCGGGGATCGGTTTCCAACTATTGAAGATATGAAGAACCTCAAATATGCCACACGAATAATTAATGAATCCTTGAGGCTTTACCCACAGCCACCGGTTTTAATACGTCGATCTCTTGACAACGATATGCTTGGGAAGTACCCAATAAAGAAGGGTGAGGACATATTCATATCTGTTTGGAACCTACATCGTGGTCCAAATCTCTGGGACGATGCAGATAAATTTAATCCAGAAAGGTGGCCCTTGGATGGACCCAATCCAAATGAGACAAATCAAAATTTCAGATATTTGCCCTTTGGAGGTGGACCACGGAAATGTGTGGGAGACATGTTTGCTTCATACGAGACTGTTGTAGCACTTGCCATGCTTGTTCGGCGATTCGACTTCCAAATGGCACTTGGAGCACCTCCTGTCAAAATGACAACAGGAGCTACAATTCACACAACAGATGGATTGAAAATGACAGTTACGCGAAGAATGAAACCTCCAATCATACCCTCATTAGAGATGCCTGCAATGGTCCTTGACTCGCCTGTCGTTGATTCGTCTGTCGGCTTCATGAAAGATGAAACACAAATTGTTCAGGAAGGAGAAGTTTCTTCAGCTCATTCCTGA 2787 47.15 MRLLRQSLFLNVCATSAFYEKRFIFLLTICATSVNRSVTQSLSPPTKAQSRFHRQPKPLHRQSLIGVVTFIFRFRWVQFPLLQPVNRCSFSPASLLFAHGLSPTSLRLPLCLHRRTSFSSPLSAALTQILSYFRIPNFHRERRTINKTKKGYPTRPVRVRSGRVVPTTDPKLGRISLSVQSTRAGAFTPLESIIRVYLAFGGDLGLNCVESGRTGATGTERGRKDSTHASGPSGRPRPRPWVEADHMGWAKARSLRPWADPLACSSSRAHFLVVSLDCIGLSCLVLRFCPSTMAANFTLLKPCSAFSTPSSVQRRFRAQRLVCTGPSSSFYPQCPGGANGLCIVKCASSNGKEPDSLGNGVKSVKQLLEEKRRAELSARIASGEFTVQKAGFPSVLRSGLSKMGVPSEILDILFAFVNAQDEYPKIPEAKGSINAVRSEAFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNPKNYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPSLHMKYVGAMINLFGEAADRLCKKLDAAASDGVDVELESLFSRLTLDIIGKAVFNYDFDSLTNDAGIVEQAVYTVLREAEDRSVAPIPVWEIPIWKDISPRQKKVSKALKLINDTLDQLIAICKRMVDEEELQFHEEYMNEQDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSQEPRIMAKLQEEVDSVLGDRFPTIEDMKNLKYATRIINESLRLYPQPPVLIRRSLDNDMLGKYPIKKGEDIFISVWNLHRGPNLWDDADKFNPERWPLDGPNPNETNQNFRYLPFGGGPRKCVGDMFASYETVVALAMLVRRFDFQMALGAPPVKMTTGATIHTTDGLKMTVTRRMKPPIIPSLEMPAMVLDSPVVDSSVGFMKDETQIVQEGEVSSAHS 928
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 12030175 12039967 + Maker00029976 Lcy6g1081 635525
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1081 928 PRINTS P450 superfamily signature 821 830 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS P450 superfamily signature 743 754 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS P450 superfamily signature 691 708 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS P450 superfamily signature 830 841 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 MobiDBLite consensus disorder prediction 213 240 - -
Lcy6g1081 928 Pfam Cytochrome P450 446 867 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 CDD CYP97 443 877 - -
Lcy6g1081 928 SUPERFAMILY Cytochrome P450 442 883 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PANTHER CYTOCHROME P450 FAMILY 4 437 881 IPR050196 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016123(PANTHER)
Lcy6g1081 928 FunFam Carotene epsilon-monooxygenase, chloroplastic 427 885 - -
Lcy6g1081 928 Gene3D Cytochrome P450 424 888 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS E-class P450 group I signature 449 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS E-class P450 group I signature 700 726 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS E-class P450 group I signature 830 853 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS E-class P450 group I signature 820 830 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS E-class P450 group I signature 782 806 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS E-class P450 group I signature 742 760 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 PRINTS E-class P450 group I signature 680 697 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy6g1081 928 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 823 832 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2103 Lcy-Chr4:47622365 Lcy6g1081 Lcy-Chr6:12030175 3.60E-14 dispersed
Lcy6g1081 Lcy-Chr6:12030175 Lcy7g0355 Lcy-Chr7:2994257 7.13E-39 dispersed
Lcy1g1301 Lcy-Chr1:12435542 Lcy6g1081 Lcy-Chr6:12030175 3.78E-114 transposed
Lcy6g0733 Lcy-Chr6:7122775 Lcy6g1081 Lcy-Chr6:12030175 1.16E-71 transposed
Lcy6g0734 Lcy-Chr6:7133409 Lcy6g1081 Lcy-Chr6:12030175 6.24E-55 transposed
Lcy9g1967 Lcy-Chr9:44621530 Lcy6g1081 Lcy-Chr6:12030175 4.52E-29 transposed
Lcy6g1081 Lcy-Chr6:12030175 Lcy8g0775 Lcy-Chr8:28434374 3.98E-11 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1081 K15747 - csv:101215492 1131.7