Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g1081 | ATGCGTCTTCTCCGTCAATCTCTCTTTCTCAACGTCTGCGCGACCTCCGCCTTCTACGAAAAGAGATTTATTTTCTTGCTCACCATCTGCGCGACCTCCGTCAATCGCTCAGTGACCCAATCGCTTTCACCTCCGACCAAAGCCCAATCTCGCTTTCACCGGCAACCGAAACCACTTCATCGGCAATCGCTCATTGGCGTCGTCACTTTCATTTTTCGTTTTCGATGGGTTCAGTTTCCTTTGCTTCAGCCGGTAAATCGTTGCTCTTTCTCGCCGGCGTCGTTGCTCTTTGCTCATGGTCTGTCGCCGACGTCGTTGCGCTTGCCACTGTGCCTTCATCGCCGAACAAGCTTTTCTTCTCCCCTCTCCGCTGCTCTGACCCAAATCCTTTCTTACTTCAGAATCCCCAATTTTCATCGGGAGAGGAGAACGATCAACAAAACGAAAAAGGGTTACCCGACCCGACCAGTTCGGGTTAGGTCAGGTCGGGTTGTTCCTACAACCGACCCCAAGTTGGGTCGGATCAGTTTGTCCGTACAATCGACCCGGGCCGGAGCTTTTACACCCCTAGAATCTATCATTAGGGTTTACTTGGCATTCGGAGGCGATTTAGGGCTGAACTGTGTGGAATCGGGGCGGACCGGGGCAACAGGGACCGAACGGGGTCGTAAGGACTCGACCCACGCAAGTGGGCCGAGTGGTCGGCCTCGGCCTCGTCCTTGGGTCGAGGCCGATCATATGGGTTGGGCCAAGGCCCGATCCCTCCGGCCTTGGGCCGACCCTCTGGCCTGTTCCTCCTCTAGGGCCCATTTCCTGGTTGTCTCCTTGGACTGTATTGGATTGTCCTGCTTAGTCCTTAGATTCTGCCCATCTACCATGGCTGCCAATTTCACCCTGCTTAAACCCTGTTCGGCATTTTCGACCCCATCATCCGTTCAGAGGAGATTTCGTGCGCAGAGACTAGTATGCACTGGCCCATCTTCCTCTTTTTATCCACAATGCCCGGGAGGAGCTAATGGTTTGTGCATCGTTAAATGTGCTTCTTCAAATGGGAAGGAGCCTGATTCGTTGGGTAATGGAGTTAAAAGTGTGAAGCAGTTACTTGAAGAGAAACGGCGAGCAGAATTGTCTGCTCGGATTGCTTCTGGAGAATTCACAGTCCAAAAAGCTGGTTTTCCATCTGTATTGAGGAGTGGTTTGTCGAAGATGGGTGTTCCCAGTGAGATTCTGGACATATTATTTGCTTTCGTCAATGCTCAAGATGAATATCCCAAAATTCCTGAAGCAAAAGGATCAATAAATGCAGTTCGTAGTGAGGCCTTCTTCATACCTCTGTATGAGCTTTATCTCACCTATGGTGGAATATTTAGATTGACCTTTGGGCCAAAGTCATTTTTGATAGTTTCAGATCCTTCAATTGCCAAACATATACTGAAGGATAATCCAAAGAATTATTCTAAGGGCATCTTAGCTGAAATTCTAGACTTTGTCATGGGGAAGGGACTTATACCAGCTGATGGGGAGATATGGCGTGTACGAAGACGGGCTATAGTCCCATCTTTGCATATGAAGTATGTAGGAGCTATGATTAATCTTTTTGGAGAAGCTGCAGATAGGCTTTGCAAGAAGCTAGATGCCGCAGCATCTGATGGGGTAGATGTGGAATTGGAGTCCCTCTTCTCCCGTCTGACTTTAGATATCATTGGCAAAGCAGTTTTTAACTATGACTTTGATTCACTTACAAACGATGCTGGCATAGTCGAGCAGGCTGTTTACACTGTGCTAAGAGAAGCAGAAGATCGTAGTGTTGCACCAATTCCGGTGTGGGAAATTCCAATTTGGAAGGATATTTCACCACGGCAAAAAAAAGTCTCTAAAGCCCTCAAATTGATCAATGACACCCTCGATCAACTAATTGCCATATGCAAGAGGATGGTTGATGAGGAGGAGCTGCAGTTTCATGAGGAATACATGAATGAGCAAGATCCTAGCATCCTTCATTTCCTCTTGGCATCAGGAGATGATGTTTCGAGCAAGCAGCTTCGTGATGACTTGATGACTATGCTTATAGCTGGGCATGAAACATCTGCTGCAGTTTTAACATGGACCTTTTATCTTCTTTCCCAGGAGCCTAGGATCATGGCCAAGCTCCAAGAGGAGGTTGATTCGGTCCTCGGGGATCGGTTTCCAACTATTGAAGATATGAAGAACCTCAAATATGCCACACGAATAATTAATGAATCCTTGAGGCTTTACCCACAGCCACCGGTTTTAATACGTCGATCTCTTGACAACGATATGCTTGGGAAGTACCCAATAAAGAAGGGTGAGGACATATTCATATCTGTTTGGAACCTACATCGTGGTCCAAATCTCTGGGACGATGCAGATAAATTTAATCCAGAAAGGTGGCCCTTGGATGGACCCAATCCAAATGAGACAAATCAAAATTTCAGATATTTGCCCTTTGGAGGTGGACCACGGAAATGTGTGGGAGACATGTTTGCTTCATACGAGACTGTTGTAGCACTTGCCATGCTTGTTCGGCGATTCGACTTCCAAATGGCACTTGGAGCACCTCCTGTCAAAATGACAACAGGAGCTACAATTCACACAACAGATGGATTGAAAATGACAGTTACGCGAAGAATGAAACCTCCAATCATACCCTCATTAGAGATGCCTGCAATGGTCCTTGACTCGCCTGTCGTTGATTCGTCTGTCGGCTTCATGAAAGATGAAACACAAATTGTTCAGGAAGGAGAAGTTTCTTCAGCTCATTCCTGA | 2787 | 47.15 | MRLLRQSLFLNVCATSAFYEKRFIFLLTICATSVNRSVTQSLSPPTKAQSRFHRQPKPLHRQSLIGVVTFIFRFRWVQFPLLQPVNRCSFSPASLLFAHGLSPTSLRLPLCLHRRTSFSSPLSAALTQILSYFRIPNFHRERRTINKTKKGYPTRPVRVRSGRVVPTTDPKLGRISLSVQSTRAGAFTPLESIIRVYLAFGGDLGLNCVESGRTGATGTERGRKDSTHASGPSGRPRPRPWVEADHMGWAKARSLRPWADPLACSSSRAHFLVVSLDCIGLSCLVLRFCPSTMAANFTLLKPCSAFSTPSSVQRRFRAQRLVCTGPSSSFYPQCPGGANGLCIVKCASSNGKEPDSLGNGVKSVKQLLEEKRRAELSARIASGEFTVQKAGFPSVLRSGLSKMGVPSEILDILFAFVNAQDEYPKIPEAKGSINAVRSEAFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNPKNYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPSLHMKYVGAMINLFGEAADRLCKKLDAAASDGVDVELESLFSRLTLDIIGKAVFNYDFDSLTNDAGIVEQAVYTVLREAEDRSVAPIPVWEIPIWKDISPRQKKVSKALKLINDTLDQLIAICKRMVDEEELQFHEEYMNEQDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSQEPRIMAKLQEEVDSVLGDRFPTIEDMKNLKYATRIINESLRLYPQPPVLIRRSLDNDMLGKYPIKKGEDIFISVWNLHRGPNLWDDADKFNPERWPLDGPNPNETNQNFRYLPFGGGPRKCVGDMFASYETVVALAMLVRRFDFQMALGAPPVKMTTGATIHTTDGLKMTVTRRMKPPIIPSLEMPAMVLDSPVVDSSVGFMKDETQIVQEGEVSSAHS | 928 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 12030175 | 12039967 | + | Maker00029976 | Lcy6g1081 | 635525 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g1081 | 928 | PRINTS | P450 superfamily signature | 821 | 830 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | P450 superfamily signature | 743 | 754 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | P450 superfamily signature | 691 | 708 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | P450 superfamily signature | 830 | 841 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | MobiDBLite | consensus disorder prediction | 213 | 240 | - | - | |
| Lcy6g1081 | 928 | Pfam | Cytochrome P450 | 446 | 867 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | CDD | CYP97 | 443 | 877 | - | - | |
| Lcy6g1081 | 928 | SUPERFAMILY | Cytochrome P450 | 442 | 883 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PANTHER | CYTOCHROME P450 FAMILY 4 | 437 | 881 | IPR050196 | GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016123(PANTHER) | |
| Lcy6g1081 | 928 | FunFam | Carotene epsilon-monooxygenase, chloroplastic | 427 | 885 | - | - | |
| Lcy6g1081 | 928 | Gene3D | Cytochrome P450 | 424 | 888 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | E-class P450 group I signature | 449 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | E-class P450 group I signature | 700 | 726 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | E-class P450 group I signature | 830 | 853 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | E-class P450 group I signature | 820 | 830 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | E-class P450 group I signature | 782 | 806 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | E-class P450 group I signature | 742 | 760 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | PRINTS | E-class P450 group I signature | 680 | 697 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g1081 | 928 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 823 | 832 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g2103 | Lcy-Chr4:47622365 | Lcy6g1081 | Lcy-Chr6:12030175 | 3.60E-14 | dispersed | |
| Lcy6g1081 | Lcy-Chr6:12030175 | Lcy7g0355 | Lcy-Chr7:2994257 | 7.13E-39 | dispersed | |
| Lcy1g1301 | Lcy-Chr1:12435542 | Lcy6g1081 | Lcy-Chr6:12030175 | 3.78E-114 | transposed | |
| Lcy6g0733 | Lcy-Chr6:7122775 | Lcy6g1081 | Lcy-Chr6:12030175 | 1.16E-71 | transposed | |
| Lcy6g0734 | Lcy-Chr6:7133409 | Lcy6g1081 | Lcy-Chr6:12030175 | 6.24E-55 | transposed | |
| Lcy9g1967 | Lcy-Chr9:44621530 | Lcy6g1081 | Lcy-Chr6:12030175 | 4.52E-29 | transposed | |
| Lcy6g1081 | Lcy-Chr6:12030175 | Lcy8g0775 | Lcy-Chr8:28434374 | 3.98E-11 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy6g1081 | K15747 | - | csv:101215492 | 1131.7 |