Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1083 ATGCCATTTCTGAACCTTCCATCATCCTTTCACTTCCTTCTTTTCTCCATCTCCTTCCTCCACTTCTTTCTTCCGGCTCTCTCCTTGGACAGCGACTACGATATTCTGATTCGGGTCAAAAACACCCAGCTCGACGACCCCAATGGCAGTTTGAAGAATTGGGTTCCCAACCAAGCTCGCAGCGTCTGTAATTGGACTGGGATCACCTGCGATTCCACAAATTCCTCCGTCGTTTCCATCGATTTGATTAGTTCCGGTCTCGCCGGCGGATTTCCGTTCCATTTTTGCAGTATTCCGACGCTGAAAAACCTCACTATCTCCGACGCCTACATCAATGGAACTTTACTGTCCCCTTCCTTCTCTCGATGTTCTCACCTGCAACTCCTCAATCTTTCACAGAACTCACTCGTTGGGAAGCTGCCGGAGTTTTCTCCTGTTTTCAAAGACCTGCAAATTCTCGATCTCTCCAGTAACAATTTCACCGGAGAGATTCCTCAGAGTTTCGGCCGGTTGTCGGCGCTGAGAAAGCTCCGTTTGACGGCTAATTTGCTCCACGGACCGCTCCCCTCTGTTCTGGGAAATCTCAGTGAGCTAACCGAAATGGCCATCGCTTATATGTCGTCGTCGTTCAAACCGAGTCCGTTACCGTTGGAAATCGGAAACCTGACGAAACTCGAAAATATATTTTTACCCCAATTGAATCTCATCGGAACCATTCCTGATTCCATCGGAAAACTTGCTCTGCTAACGAATCTCGATTTATCTACCAATTCGATTTCCGGTCCGATCCCGGATTCAATCGGCGGACTGAGGAGCATACAGAAAATTCAACTATTTAACAACCGAATCTCTGGTGAGTTGCCGGAGAGCATCGGTAATTTAACTAATCTGTATCAACTCGACATCTCTCAGAATAATCTCACCGGGAAATTGCCGGAAAAAATTGCTGCTCTCCCTCTTCAATCTCTGCATCTCAATGACAATTTTCTCGAAGGTGAGGTTCCGGCGAGTTTAGCTTCTAACCCATATCTCTCCCAGTTGAAACTGTTCAACAATAGCTTTTCCGGTGAACTTCCCAGAAATTTGGGTCGGAATTCTGATTTGAATGAGATTGATGTCTCTTCCAATCATTTCGAAGGTGAAGTTCCGAAATTCCTCTGCCATGGAAACAATCTACAGAGAATCATTTTATTCAACAATGGTTTCTCTGGAAATTTTCCAGAATCGTACGGTAGTTGCAATTCTCTGAATTATGTCAGAATCGAGAACAATCAACTTTCTGGCGAGTTACCGGACTCGTTCTGGAATCTTTCTCAGCTTACCGAAATTCGGTTGTCGGAAAATCGATTTCAGGGTTCAATTCCGCCGTCGATAAACGGCGCTCGTGATCTCGAAGACTTATTGATTTCCGGCAATAATTTCTCCGGCAAGTTACCGGCGGAGGTTTGCAAATTGCAAAAGCTCGTCAGGTTTGACGTCAGCAGGAACAGATTCTCCGGCGAAGTTCCTTCCTGTATAACAGAGTTGCAGAAACTTCAAAAGCTCGACATGCAAGAAAACATGTTCACCGGTGAAATACCCGAATCGGTTAACTCGTGGAAAGAATTAACCGAGTTCAATCTGTCCCACAATCAATTTTCCGGCGAGATTCCACCTCAGCTCGGCGATTTACCCGTTCTAAAGTACTTGGATCTCTCTTCAAATCTACTCTCCGGCGAAATCCCCGAGGAATTGACGAAGCTGAAACTGGACGAGTTCAACTTTTCCAACAACAAATTGTCCGGCCAAGTTCCTTCCGGCTTCGACAACGAACTGTTCGTCGGTAGTTTAATGGGTAATCCGGGTCTCTGTAGCCCGGATTTGAAGCCGCTGAACCGGTGCCCGAAGCCCAAACCCATAAGTTTTTATGTCGTCGTTGTTCTGTCGGTTCTGGCTTTCGTTCTCATCGGGTCTCTCATCTGGGTAATCAAATTCAAGATGAATCTCTTCGGGAAATCGAAATCTCCATGGACGGTGACCAAGTTCCAGCGGGTCGGGTTCGATGAAGAAGATGTAATTCCTCATCTAACCAAAGCAAATGTAATCGGGTCAGGCGGTTCGGGTACCGTATTCAAGGTGGACCTGAAATCGGGTCAGACCGTGGCCGTCAAAAGTCTCTGGGGAGGCCACGACAAATTGGATTCAGAATCGGTTTTCCAGTCAGAAGTTGAGACATTGGGTCGGATCCGCCATGCCAATATTGTGAAGTTGCTGTTCAGTTGCAGCAATGGTGAAGGAAATAGAATTCTTGCATACGAGTTCATGGAGAATGGGAGCTTGGGAGATGTTTTGCACGAACACAAATCAGAAGCTTTGTCAGATTGGTCGAAAAGATTCGACATCGCCATGGGAGCAGCTCAAGGACTAGCTTATCTGCACCACGACTGCGTGCCTCCAATAATCCATCGCGACGTTAAGAGCAACAACATTCTCTTGGATGGAGAATTTCGACCTCGGGTGGCTGATTTTGGGTTGGCAAAGACACTGCAGCGACAGACGGAGGCCGACGAAGGTGGTGTCATGTCTCGCATTGCTGGCTCCTACGGCTACATCGCCCCTGAGTACGGATATACTATGAAGGTGACAGAGAAGAGCGACGTGTACAGTTTCGGAGTGGTGTTAATGGAACTCGTGACAGGGAAGCGACCGAACGATCCGTGCTTTGGGGAGAATAGAGATATTGTAAAATGGGTGATGGAAGCTGTTTTGTTGGAGGGAGAGGAAGAGAAAGGGTTGAGTTTGGATGAGATTATTGATGAAAAATTGGATCCAAGGACATGTGAAGTAGAAGAGATAGTGAAGATTTTGGATGTGGCAGTGCTTTGTACCTCTGCTTTGCCCAATGACAGACCTTCCATGAGAAGAGTAGTTGAGTTGATAAGGGAAAGCAAATCAGCTTGTCCCAAGTCATGA 2952 46.68 MPFLNLPSSFHFLLFSISFLHFFLPALSLDSDYDILIRVKNTQLDDPNGSLKNWVPNQARSVCNWTGITCDSTNSSVVSIDLISSGLAGGFPFHFCSIPTLKNLTISDAYINGTLLSPSFSRCSHLQLLNLSQNSLVGKLPEFSPVFKDLQILDLSSNNFTGEIPQSFGRLSALRKLRLTANLLHGPLPSVLGNLSELTEMAIAYMSSSFKPSPLPLEIGNLTKLENIFLPQLNLIGTIPDSIGKLALLTNLDLSTNSISGPIPDSIGGLRSIQKIQLFNNRISGELPESIGNLTNLYQLDISQNNLTGKLPEKIAALPLQSLHLNDNFLEGEVPASLASNPYLSQLKLFNNSFSGELPRNLGRNSDLNEIDVSSNHFEGEVPKFLCHGNNLQRIILFNNGFSGNFPESYGSCNSLNYVRIENNQLSGELPDSFWNLSQLTEIRLSENRFQGSIPPSINGARDLEDLLISGNNFSGKLPAEVCKLQKLVRFDVSRNRFSGEVPSCITELQKLQKLDMQENMFTGEIPESVNSWKELTEFNLSHNQFSGEIPPQLGDLPVLKYLDLSSNLLSGEIPEELTKLKLDEFNFSNNKLSGQVPSGFDNELFVGSLMGNPGLCSPDLKPLNRCPKPKPISFYVVVVLSVLAFVLIGSLIWVIKFKMNLFGKSKSPWTVTKFQRVGFDEEDVIPHLTKANVIGSGGSGTVFKVDLKSGQTVAVKSLWGGHDKLDSESVFQSEVETLGRIRHANIVKLLFSCSNGEGNRILAYEFMENGSLGDVLHEHKSEALSDWSKRFDIAMGAAQGLAYLHHDCVPPIIHRDVKSNNILLDGEFRPRVADFGLAKTLQRQTEADEGGVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDPCFGENRDIVKWVMEAVLLEGEEEKGLSLDEIIDEKLDPRTCEVEEIVKILDVAVLCTSALPNDRPSMRRVVELIRESKSACPKS 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12087105 12091130 - Maker00029957 Lcy6g1083 635527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1083 983 SMART LRR_typ_2 437 461 IPR003591 -
Lcy6g1083 983 SMART LRR_typ_2 509 533 IPR003591 -
Lcy6g1083 983 SMART LRR_typ_2 246 270 IPR003591 -
Lcy6g1083 983 SMART LRR_typ_2 147 170 IPR003591 -
Lcy6g1083 983 SMART LRR_typ_2 294 318 IPR003591 -
Lcy6g1083 983 SMART LRR_typ_2 171 194 IPR003591 -
Lcy6g1083 983 SMART LRR_typ_2 557 581 IPR003591 -
Lcy6g1083 983 SUPERFAMILY L domain-like 320 636 - -
Lcy6g1083 983 SMART serkin_6 689 979 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1083 983 Gene3D Ribonuclease Inhibitor 208 318 IPR032675 -
Lcy6g1083 983 FunFam Leucine-rich repeat receptor protein kinase EMS1 116 212 - -
Lcy6g1083 983 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 975 IPR050647 -
Lcy6g1083 983 ProSiteProfiles Protein kinase domain profile. 689 983 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1083 983 SUPERFAMILY Protein kinase-like (PK-like) 682 972 IPR011009 -
Lcy6g1083 983 Pfam Leucine Rich Repeat 415 437 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 536 557 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 150 171 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 583 603 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 249 270 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 296 316 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 272 294 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 560 581 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 439 459 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 464 485 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Leucine Rich Repeat 511 531 IPR001611 GO:0005515(InterPro)
Lcy6g1083 983 Pfam Protein kinase domain 691 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1083 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1083 983 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 768 983 - -
Lcy6g1083 983 ProSitePatterns Protein kinases ATP-binding region signature. 695 717 IPR017441 GO:0005524(InterPro)
Lcy6g1083 983 Gene3D Phosphorylase Kinase; domain 1 674 767 - -
Lcy6g1083 983 SUPERFAMILY RNI-like 103 427 - -
Lcy6g1083 983 Gene3D Ribonuclease Inhibitor 28 207 IPR032675 -
Lcy6g1083 983 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Lcy6g1083 983 Gene3D Ribonuclease Inhibitor 319 632 IPR032675 -
Lcy6g1083 983 FunFam Leucine-rich receptor-like protein kinase family protein 215 313 - -
Lcy6g1083 983 Gene3D Transferase(Phosphotransferase) domain 1 768 981 - -
Lcy6g1083 983 FunFam Receptor-like protein kinase HSL1 319 624 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0315 Lcy-Chr1:2788352 Lcy6g1083 Lcy-Chr6:12087105 3.26E-94 dispersed
Lcy5g2087 Lcy-Chr5:43965807 Lcy6g1083 Lcy-Chr6:12087105 3.45E-71 dispersed
Lcy6g1083 Lcy-Chr6:12087105 Lcy9g1650 Lcy-Chr9:41654795 3.99E-80 dispersed
Lcy6g1083 Lcy-Chr6:12087105 Lcy6g1085 Lcy-Chr6:12136941 2.63E-78 proximal
Lcy1g0870 Lcy-Chr1:7482960 Lcy6g1083 Lcy-Chr6:12087105 1.79E-77 wgd
Lcy4g0252 Lcy-Chr4:3086033 Lcy6g1083 Lcy-Chr6:12087105 3.00E-53 wgd
Lcy6g0958 Lcy-Chr6:9927952 Lcy6g1083 Lcy-Chr6:12087105 3.04E-54 wgd
Lcy6g1083 Lcy-Chr6:12087105 Lcy9g1649 Lcy-Chr9:41629593 2.85E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66031 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1083 - - - 0.0