Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1084 ATGAAATATTACGCTCTCACAAGATTGGTGATTTTTGTCTCAGGTTTTGCAGCCATCATCTCCGCAGCTTCACCGCCAGTTCCGTCGGACAAGTCGCAACTAAACAAATGGTTTTCCGAAAACGTGAAGCCCTTAGCCGATCGGAAGGCCGGGCTCGATCCAGCCCTCCTGGCGGCGGAACAAAACGGCACCGTCGTGAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACAGTCACCGAAGCCATCGCGAGCGTTCCAGCAGATAACAAGAAACGCGTCGTGATTTGGATCGGAGGAGGAGTTTATAAAGAGAAGCTCAAGATCGATAGAAACAAGCCATTCGTTACTCTCTACGGCTCTCCCAATAACATGCCAAAATTGACATTCGACGGCGACGCCGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTAGAGTCTAATTACTTCACCGCTGCCAATCTCGTCATCGAGAATTCGTCCCCAAGGCCAGATGGGGTGAGAAAAGGAGCACAGGCCTTAGCAGCCAGATTTTTAGGGGATAAAGCCGCCATTTACAATTGCAAATTCATTGGGTTTCAAGACACTCTTTGCGACGACGACGGTTTGCATCTCTACAAGGATTGCTTCATTCAAGGGACTGTGGATTTCATTTTCGGAAAAGGAACCTCCCTTTATTTGAACACTCAGTTGGATGTGGCGGGGGATGGGGGATTGGCAGTGATCACGGCCCATTCAAGAGAAAAGGAAGCCCACCCAAGTGGATATGCATTCGTGCATTGTAGCATTACTGGAACCGGTGGCAAGAACACTTACTTGGGAAGAGCTTGGATGGCCAGGTCCCGAACCATATTCGCTTACACCACAATGGCCGACATCATCCATCCCGAAGGCTGGAACGACATGAACCATCCCGGTTACGACGCCACGGTTTTGTTCGGAGAATACAAGTGTTCGGGGCCGGGAGCGGCGCCAAGCGGACGTGTGAAATACGGCAAGCAGTTGACTGATGTGGAAGTGAAGCCGTTCCTTACTCTTGATTACGTGGAGAGTGAGAAGTGGCTGCTTCCTCCTCCCAACCCTGAGGCTTAG 1098 50.73 MKYYALTRLVIFVSGFAAIISAASPPVPSDKSQLNKWFSENVKPLADRKAGLDPALLAAEQNGTVVKVRADGSGDFKTVTEAIASVPADNKKRVVIWIGGGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESNYFTAANLVIENSSPRPDGVRKGAQALAARFLGDKAAIYNCKFIGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNTQLDVAGDGGLAVITAHSREKEAHPSGYAFVHCSITGTGGKNTYLGRAWMARSRTIFAYTTMADIIHPEGWNDMNHPGYDATVLFGEYKCSGPGAAPSGRVKYGKQLTDVEVKPFLTLDYVESEKWLLPPPNPEA 365
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 12130314 12132383 - Maker00029792 Lcy6g1084 635528
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1084 365 Gene3D - 61 360 IPR012334 -
Lcy6g1084 365 Pfam Pectinesterase 66 351 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy6g1084 365 SUPERFAMILY Pectin lyase-like 63 358 IPR011050 -
Lcy6g1084 365 ProSitePatterns Pectinesterase signature 2. 213 222 IPR033131 -
Lcy6g1084 365 FunFam Pectinesterase 61 359 - -
Lcy6g1084 365 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 54 357 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0999 Lcy-Chr2:9343520 Lcy6g1084 Lcy-Chr6:12130314 5.34E-130 dispersed
Lcy6g1084 Lcy-Chr6:12130314 Lcy8g2037 Lcy-Chr8:46622453 3.60E-258 dispersed
Lcy6g1084 Lcy-Chr6:12130314 Lcy4g1777 Lcy-Chr4:43837242 3.20E-57 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1084 K01051 - csv:101205095 618.616